PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G091800.1
Common NamePOPTR_0017s12740g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 550aa    MW: 60996.3 Da    PI: 8.1115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G091800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015931123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C+ksF +  +L  H++ H
  Potri.017G091800.1  9 HVCKLCKKSFLTGKMLGGHMKIH 31
                        79*******************99 PP
2zf-C2H214.50.000181102223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         kC  Cgk F ++ +L+ H+r H
  Potri.017G091800.1  81 KCRVCGKEFGSPKSLHGHMRHH 102
                         7*******************99 PP
3zf-C2H214.30.00012112132323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C+ Cg+ F +  +L +H+r+H
  Potri.017G091800.1 112 CEECGRGFLSLKSLSNHMRLH 132
                         ********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.5E-6536No hitNo description
PfamPF139126.2E-6831IPR007087Zinc finger, C2H2
SMARTSM003550.25931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.325936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.02580102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.11580107IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-981132No hitNo description
Gene3DG3DSA:3.30.160.607.0E-481104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-481104IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM003550.033110132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.845110132IPR007087Zinc finger, C2H2
PfamPF138949.9E-5111133No hitNo description
PROSITE patternPS000280112133IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-5112133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.4384406IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598384411IPR007087Zinc finger, C2H2
PfamPF139129.8E-6384408IPR007087Zinc finger, C2H2
SuperFamilySSF576674.6E-7384406No hitNo description
PROSITE patternPS000280386406IPR007087Zinc finger, C2H2
SuperFamilySSF576674.6E-7461488No hitNo description
SMARTSM003550.73466488IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995466493IPR007087Zinc finger, C2H2
PfamPF139121.3E-8466488IPR007087Zinc finger, C2H2
PROSITE patternPS000280468488IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MKKNQEKVHV CKLCKKSFLT GKMLGGHMKI HGARKSIKEY VKFESNNMGS ECHGLREQPK  60
KSWKFSGLNH DGSVSMQETA KCRVCGKEFG SPKSLHGHMR HHSAKERKGV YCEECGRGFL  120
SLKSLSNHMR LHHKKLRVSS SGPNLVVMAL SATETVNLVR RKRSSRMRYK ITPNSSFSRS  180
NESVSGFDIE QEVEEVAITL IMMSRGECNG FDSLCQSKRI ERGEGYHGFD GNGFARPKKT  240
GEDYLDSCDL DYKISISGGE GDIGMGYGEA EQVRLEVPME SFHKDVESKS PQLDDESGVE  300
FCGIEIEKGG HGELINNCTV AESSLDLMGG VGLDVARLGF QKSIPINQAN YDASDAEMGQ  360
DARLQMVVAT DSDITESPSK KGDFRCRICN RNFISYQSLG GHQTFHRKSS IGLKVDSCKR  420
DIQAIFSPET KAIGKLVKIE CIQESVKQET DGVIVKDCES KEGKEHKCPV CFKVFLSGQA  480
LGGHKRAHFP KAREEQNIAV NREVSDICNV FTINVPFTVA PELSNDVRCE SWWPANSHKH  540
EPLVGLIAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G091800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707970.0AB970797.1 Populus nigra PniZF1 mRNA for zinc-finger protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324101.30.0uncharacterized protein LOC7467884
TrEMBLA0A2K1X5I10.0A0A2K1X5I1_POPTR; Uncharacterized protein
STRINGPOPTR_0017s12740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Representative plantOGRP1487534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.17e-17zinc-finger protein 1