PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G088300.1
Common NamePOPTR_0017s12430g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 536aa    MW: 58662.3 Da    PI: 8.1761
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G088300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.11.8e-33239295259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +DgynWrKYGqK++kgse+prsYY+Ct+ +Cpvkkkvers+ d++++ei+Y+g+Hnh+
  Potri.017G088300.1 239 HDGYNWRKYGQKPIKGSEYPRSYYKCTHLNCPVKKKVERSS-DGQITEIIYKGQHNHD 295
                         7****************************************.***************7 PP

2WRKY106.51.4e-33421479159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+a dpk+v++tYeg+Hnh+
  Potri.017G088300.1 421 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERAAADPKAVVTTYEGKHNHD 479
                         59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.029233297IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-29235297IPR003657WRKY domain
SuperFamilySSF1182902.09E-26237297IPR003657WRKY domain
SMARTSM007741.7E-37238296IPR003657WRKY domain
PfamPF031068.8E-26240295IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-37406481IPR003657WRKY domain
SuperFamilySSF1182901.96E-29413481IPR003657WRKY domain
PROSITE profilePS5081138.641416481IPR003657WRKY domain
SMARTSM007748.1E-40421480IPR003657WRKY domain
PfamPF031064.2E-26422479IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MAEKQQNLTT APAPARPTIT LPPRPSMETL FTGGLSPGPM TLVSSFFADS PYPESDYRSF  60
SQLLAGAMAS PIASPAFFND HSIPNNNTNT ATATATATSS KDDGFRQSRP MNLVVARSPL  120
FTVPPGLSPS GLLNSPGFFP PQSPFGMSHQ QALAQVTAHA ALLAQSQMHM HAQYQPSSLT  180
APTELLTRHP SFNPGEALQQ QQQMPHSTSD TQNSVVELTE FSHSERKYQP PAAVDKPTHD  240
GYNWRKYGQK PIKGSEYPRS YYKCTHLNCP VKKKVERSSD GQITEIIYKG QHNHDLPQPN  300
KRSKDCNDSN GSIHLQSKPE VGSQAQAGNA IKLTETLPAH SVIGRDQEST QADPSEPPGP  360
SDSEEAGDAA VQEEERGDDE PNPKRRQCRQ VDVVTSEATL PHKTVTEPKI IVQTRSEVDL  420
LDDGYRWRKY GQKVVKGNPH PRSYYKCTSA GCNVRKHVER AAADPKAVVT TYEGKHNHDV  480
PAARNSSHNT ANTSASQVKP QKVVTEKHPL HKGMEFGNND QRPVLLQLKE EKIAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-40240482878Probable WRKY transcription factor 4
2lex_A3e-40240482878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G088300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444415.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-145WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2K1X5D20.0A0A2K1X5D2_POPTR; Uncharacterized protein
STRINGPOPTR_0017s12430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-120WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]