PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G088300.1 | ||||||||
Common Name | POPTR_0017s12430g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 536aa MW: 58662.3 Da PI: 8.1761 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.1 | 1.8e-33 | 239 | 295 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK++kgse+prsYY+Ct+ +Cpvkkkvers+ d++++ei+Y+g+Hnh+ Potri.017G088300.1 239 HDGYNWRKYGQKPIKGSEYPRSYYKCTHLNCPVKKKVERSS-DGQITEIIYKGQHNHD 295 7****************************************.***************7 PP | |||||||
2 | WRKY | 106.5 | 1.4e-33 | 421 | 479 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+a dpk+v++tYeg+Hnh+ Potri.017G088300.1 421 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERAAADPKAVVTTYEGKHNHD 479 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 25.029 | 233 | 297 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-29 | 235 | 297 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-26 | 237 | 297 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-37 | 238 | 296 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.8E-26 | 240 | 295 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.8E-37 | 406 | 481 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-29 | 413 | 481 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.641 | 416 | 481 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.1E-40 | 421 | 480 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-26 | 422 | 479 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MAEKQQNLTT APAPARPTIT LPPRPSMETL FTGGLSPGPM TLVSSFFADS PYPESDYRSF 60 SQLLAGAMAS PIASPAFFND HSIPNNNTNT ATATATATSS KDDGFRQSRP MNLVVARSPL 120 FTVPPGLSPS GLLNSPGFFP PQSPFGMSHQ QALAQVTAHA ALLAQSQMHM HAQYQPSSLT 180 APTELLTRHP SFNPGEALQQ QQQMPHSTSD TQNSVVELTE FSHSERKYQP PAAVDKPTHD 240 GYNWRKYGQK PIKGSEYPRS YYKCTHLNCP VKKKVERSSD GQITEIIYKG QHNHDLPQPN 300 KRSKDCNDSN GSIHLQSKPE VGSQAQAGNA IKLTETLPAH SVIGRDQEST QADPSEPPGP 360 SDSEEAGDAA VQEEERGDDE PNPKRRQCRQ VDVVTSEATL PHKTVTEPKI IVQTRSEVDL 420 LDDGYRWRKY GQKVVKGNPH PRSYYKCTSA GCNVRKHVER AAADPKAVVT TYEGKHNHDV 480 PAARNSSHNT ANTSASQVKP QKVVTEKHPL HKGMEFGNND QRPVLLQLKE EKIAV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-40 | 240 | 482 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-40 | 240 | 482 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G088300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024444415.1 | 0.0 | probable WRKY transcription factor 3 | ||||
Swissprot | Q9ZQ70 | 1e-145 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | A0A2K1X5D2 | 0.0 | A0A2K1X5D2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s12430.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1545 | 34 | 100 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-120 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G088300.1 |
Entrez Gene | 7495997 |
Publications ? help Back to Top | |||
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