PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G087800.1
Common NamePOPTR_0017s12370g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 401aa    MW: 44440.9 Da    PI: 4.3474
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G087800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-194594255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Potri.017G087800.1 45 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 94
                        789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.39E-3244101No hitNo description
SMARTSM003803.8E-3545108IPR001471AP2/ERF domain
PfamPF008479.8E-144594IPR001471AP2/ERF domain
PROSITE profilePS5103219.55945102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2745101IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-1945102IPR016177DNA-binding domain
PRINTSPR003675.8E-84657IPR001471AP2/ERF domain
PRINTSPR003675.8E-86884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MARKRKVSES VEDKNSSEGT MAWDEMVKEA AAAAALGGAR RARKRFVGVR QRPSGRWVAE  60
IKDTIQKIRV WLGTFDTAEE AARAYDEAAC LLRGANTRTN FWPCSPTSST TPALPSKITN  120
LLLQRLKARN NSCDPSKTSQ PHNLQQKLVE EYREPATDFS DTQFTDFLDH PDDYPVCNDD  180
TINTNASAFD CTTKSLGPCL TEKEDSGGKE WDFDYSWSDV AQSSSGDGNN LGGEAEEDGE  240
EEEEGNDIGA LDFHFFDDVG SPFYYSPFEI AEDIEEPVEP ECYGDEPSML KAAMKRMKYE  300
RKFSASLYAF NGIPECLKLK LGSGNAKGKG RSDQLTELRN ACNGRKEGNR AEEESLEVMQ  360
KQDDYLQSST EMGSSSSSLI NDGELSLWNT LDLPPICFIN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G087800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559580.0EF155958.1 Populus trichocarpa WIN1-like protein (WIN1L) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323878.30.0uncharacterized protein LOC7495994
TrEMBLA0A2K1X5920.0A0A2K1X592_POPTR; Uncharacterized protein
STRINGPOPTR_0017s12370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-21related to AP2 11