PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G086300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 446aa    MW: 48917.7 Da    PI: 7.0651
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G086300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.3e-1858105148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
  Potri.017G086300.1  58 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 105
                         79********************************************97 PP

2Myb_DNA-binding52.61.1e-16111156148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Potri.017G086300.1 111 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 156
                         89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2549108IPR009057Homeodomain-like
PROSITE profilePS5129417.91453105IPR017930Myb domain
SuperFamilySSF466891.68E-3055152IPR009057Homeodomain-like
SMARTSM007172.6E-1457107IPR001005SANT/Myb domain
PfamPF002491.5E-1658105IPR001005SANT/Myb domain
CDDcd001671.79E-1160105No hitNo description
PROSITE profilePS5129425.891106160IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-26109160IPR009057Homeodomain-like
SMARTSM007171.2E-16110158IPR001005SANT/Myb domain
PfamPF002495.6E-16111156IPR001005SANT/Myb domain
CDDcd001671.81E-11113156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MMIIFCLRFI LVTTLNKSNS FLVLYKEPKE LPSFFADHFT KQVTMGRSPC CDKVGLKKGP  60
WTPEEDQKLL AYIEEHGHGS WRALPAKAGL QRCGKSCRLR WTNYLRPDIK RGKFSLQEEQ  120
TIIQLHALLG NRWSAIATHL PKRTDNEIKN YWNTHLKKRL AKMGIDPVTH KSKNDALLSI  180
DGQSKNAANL SHMAQWESAR LEAEARLVRE SKLRSQSIQH QLSSTTPGYF PGSGSSPGST  240
SSTLAQPPRS LDALKAWNDG WSKSSEGNGG GLNMGIGDVL ESPTSTLTFS ENAPPVMNSG  300
AVGENSISMI EFVGTSGSTE TGIIKEEGEH DWKSLSNSSH LPDNSVSLTS TLHDMTISME  360
APWNPDSLRA NCDNVHVGKN VMEEGFTHLL LSDSAERSLS DDGKDSDHSG GSGSGSGSNY  420
YEDNKNYWNS ILNLVNSSPS NSPMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27561605108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.124690.0bud| catkin
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G086300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323871.10.0transcription factor MYB16
SwissprotQ9LE631e-133MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2K1X5810.0A0A2K1X581_POPTR; Uncharacterized protein
STRINGPOPTR_0017s12230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-117myb domain protein 16