PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G086300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 446aa MW: 48917.7 Da PI: 7.0651 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9.3e-18 | 58 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl Potri.017G086300.1 58 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 105 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 111 | 156 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l Potri.017G086300.1 111 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 156 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 49 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.914 | 53 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.68E-30 | 55 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-14 | 57 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 58 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.79E-11 | 60 | 105 | No hit | No description |
PROSITE profile | PS51294 | 25.891 | 106 | 160 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-26 | 109 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-16 | 110 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-16 | 111 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.81E-11 | 113 | 156 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000902 | Biological Process | cell morphogenesis | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MMIIFCLRFI LVTTLNKSNS FLVLYKEPKE LPSFFADHFT KQVTMGRSPC CDKVGLKKGP 60 WTPEEDQKLL AYIEEHGHGS WRALPAKAGL QRCGKSCRLR WTNYLRPDIK RGKFSLQEEQ 120 TIIQLHALLG NRWSAIATHL PKRTDNEIKN YWNTHLKKRL AKMGIDPVTH KSKNDALLSI 180 DGQSKNAANL SHMAQWESAR LEAEARLVRE SKLRSQSIQH QLSSTTPGYF PGSGSSPGST 240 SSTLAQPPRS LDALKAWNDG WSKSSEGNGG GLNMGIGDVL ESPTSTLTFS ENAPPVMNSG 300 AVGENSISMI EFVGTSGSTE TGIIKEEGEH DWKSLSNSSH LPDNSVSLTS TLHDMTISME 360 APWNPDSLRA NCDNVHVGKN VMEEGFTHLL LSDSAERSLS DDGKDSDHSG GSGSGSGSNY 420 YEDNKNYWNS ILNLVNSSPS NSPMF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-27 | 56 | 160 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12469 | 0.0 | bud| catkin |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G086300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323871.1 | 0.0 | transcription factor MYB16 | ||||
Swissprot | Q9LE63 | 1e-133 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | A0A2K1X581 | 0.0 | A0A2K1X581_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s12230.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF835 | 34 | 127 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 1e-117 | myb domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G086300.1 |