PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G086200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 353aa    MW: 40125.3 Da    PI: 6.7315
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G086200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.58.9e-56161421129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL +kv ++ + + ++i evd++k+ePwdLp ++k +ekewyfF+  d+ky+tg r+nrat++gyWkatgkdke
  Potri.017G086200.1  16 LPPGFRFHPTDEELITHYLSQKVLDNYFCA-RAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVIDRKYPTGLRTNRATDAGYWKATGKDKE 105
                         79*************************988.89***************888999************************************* PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         +++  ++lvg+kktLvfykgrapkgekt+Wvmheyrle
  Potri.017G086200.1 106 IYR-AKTLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142
                         ***.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-6312166IPR003441NAC domain
PROSITE profilePS5100558.52216166IPR003441NAC domain
PfamPF023652.3E-2917141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MENNCVYSEE DEQMELPPGF RFHPTDEELI THYLSQKVLD NYFCARAIGE VDLNKCEPWD  60
LPWRAKMGEK EWYFFCVIDR KYPTGLRTNR ATDAGYWKAT GKDKEIYRAK TLVGMKKTLV  120
FYKGRAPKGE KTNWVMHEYR LEGKNPVYNP PKTAKNDWVI CRIFEKSCGG KKTHISGLVR  180
LSSYGNELKP TILPPLMDSS QHNNDKRTNI GDKSHVTCFS NPTEDQKPHE TIADCFNISL  240
RAPLSSSNMS PSSVLFSKPS PPNSFYSSHI LPNIANFQYP DSVMMPEHSM LRILLENQGP  300
GMNLNSKREL SEDTGLSTDM SSVVTNHELV HGSFEDPSSS AGPVDLDYLW NY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-551317214171NO APICAL MERISTEM PROTEIN
1ut4_B8e-551317214171NO APICAL MERISTEM PROTEIN
1ut7_A8e-551317214171NO APICAL MERISTEM PROTEIN
1ut7_B8e-551317214171NO APICAL MERISTEM PROTEIN
4dul_A8e-551317214171NAC domain-containing protein 19
4dul_B8e-551317214171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G086200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444214.10.0NAC domain-containing protein 100
SwissprotQ9FLJ21e-134NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A2K1X5690.0A0A2K1X569_POPTR; Uncharacterized protein
STRINGPOPTR_0017s12210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-135NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]