PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G085200.2 | ||||||||
Common Name | POPTR_0017s12140g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 437aa MW: 48729.7 Da PI: 8.3452 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 130 | 175 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ Potri.017G085200.2 130 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLR-GRSGKSCRLRWFNQ 175 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.9e-15 | 182 | 224 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++ ++E+e+l a++ +G++ W++Iar ++ gRt++ +k++w+ Potri.017G085200.2 182 RTAFNEDEEERLMAAHRVYGNK-WALIARFFP-GRTDNAVKNHWH 224 66899*****************.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.55 | 125 | 176 | IPR017930 | Myb domain |
SMART | SM00717 | 9.3E-15 | 129 | 178 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-16 | 130 | 175 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.24E-27 | 130 | 226 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 131 | 183 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.13E-13 | 133 | 174 | No hit | No description |
PROSITE profile | PS51294 | 25.351 | 177 | 231 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-13 | 181 | 229 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 182 | 224 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-19 | 184 | 230 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.01E-10 | 184 | 224 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MEMTLQHSHN ITCCHLENDG IPSHYTTSTA TSCNSSAMET LNNMGSLSVD PSHRMPLNIC 60 SSVCFDMGQR GFALEGKSCS NRLENNQCSE EVGDGGKEQK HKAARIENIE ESLVNGKDIM 120 EGREPKICNR GHWRPAEDSK LKELVALYGP QNWNLIAEKL RGRSGKSCRL RWFNQLDPKI 180 NRTAFNEDEE ERLMAAHRVY GNKWALIARF FPGRTDNAVK NHWHIVMARK YREQSCIYRR 240 RKRTQAVQRR VDNAGDYVSR NTVKNTDPNS NIICNSRIIK PSCLPFSPLI GGCNSTYGKM 300 TAELLFSRSH HGSLAEETSR FLSGHQMHYN MLRDSDTCTV FYAMQQSSNR HFPGFSDAMA 360 SSATQATVSE PSSSSLSVAE NTEASSFEIT TTSPPFIDFL GVGATGSARV SKTCNMYLRS 420 NCVAYGSTGI IEGKEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-32 | 130 | 230 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G085200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002324066.2 | 0.0 | transcription factor MYB54 isoform X2 | ||||
TrEMBL | B9IJZ8 | 0.0 | B9IJZ8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s12140.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-67 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G085200.2 |
Entrez Gene | 7482484 |