PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G082900.3 | ||||||||
Common Name | POPTR_0017s11920g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 284aa MW: 31360.3 Da PI: 9.1141 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 108.5 | 3.8e-34 | 68 | 124 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 + YkeClkNhAa++Ggha+DGCgEfmps+ ++ +++++lkCaACgCHRnFHRre+e+ Potri.017G082900.3 68 IAYKECLKNHAATIGGHALDGCGEFMPSPIAThTNPTSLKCAACGCHRNFHRREPED 124 68**************************999889********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 7.0E-22 | 68 | 127 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.5E-28 | 68 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.9E-30 | 70 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.434 | 70 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.26E-18 | 198 | 263 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-29 | 200 | 264 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.0E-25 | 206 | 263 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MDMTTTTTTP TPTNNNNTNT PTPKSPEAYT ETPARIHDTK PLSFTNGVLK RHPPHHHHHH 60 FSPSPIVIAY KECLKNHAAT IGGHALDGCG EFMPSPIATH TNPTSLKCAA CGCHRNFHRR 120 EPEDSPPHTA TTTTIQYQSH HRHHPLPPPQ AQPLHNGSPN SASPPPISSS YYPSGPHMLL 180 ALSGGVSGLN ENANINVPPP VGSSPRKRFR TKFSQSQKER MYQFAERVGW KMQKRDEDLV 240 QEFCNEVGVD RGVLKVWMHN NKNSLVILAC GIPFFSFKVC WAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-23 | 207 | 264 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00387 | DAP | Transfer from AT3G28920 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G082900.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU227236 | 1e-113 | CU227236.1 Populus EST from severe drought-stressed leaves. | |||
GenBank | CU228827 | 1e-113 | CU228827.1 Populus EST from severe drought-stressed leaves. | |||
GenBank | CU229016 | 1e-113 | CU229016.1 Populus EST from severe drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002324056.3 | 0.0 | zinc-finger homeodomain protein 9 | ||||
Refseq | XP_006373321.2 | 0.0 | zinc-finger homeodomain protein 9 | ||||
Refseq | XP_024444049.1 | 0.0 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LXG0 | 4e-74 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A2K1X512 | 0.0 | A0A2K1X512_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s11920.1 | 1e-141 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 2e-71 | homeobox protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G082900.3 |
Entrez Gene | 7495973 |
Publications ? help Back to Top | |||
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