PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.017G082900.1

Common Name

POPTR_0017s11920g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ZF-HD

Protein Properties

Length: 338aa MW: 37233.9 Da PI: 8.236

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.017G082900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	108.1	5e-34	68	124	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 + YkeClkNhAa++Ggha+DGCgEfmps+ ++ +++++lkCaACgCHRnFHRre+e+ Potri.017G082900.1 68 IAYKECLKNHAATIGGHALDGCGEFMPSPIAThTNPTSLKCAACGCHRNFHRREPED 124 68************************999889******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-22	68	127	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.3E-28	68	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.5E-30	70	121	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.434	70	121	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.39E-18	198	267	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.6E-30	200	268	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.7E-25	206	263	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MDMTTTTTTP TPTNNNNTNT PTPKSPEAYT ETPARIHDTK PLSFTNGVLK RHPPHHHHHH 60 FSPSPIVIAY KECLKNHAAT IGGHALDGCG EFMPSPIATH TNPTSLKCAA CGCHRNFHRR 120 EPEDSPPHTA TTTTIQYQSH HRHHPLPPPQ AQPLHNGSPN SASPPPISSS YYPSGPHMLL 180 ALSGGVSGLN ENANINVPPP VGSSPRKRFR TKFSQSQKER MYQFAERVGW KMQKRDEDLV 240 QEFCNEVGVD RGVLKVWMHN NKNSLGKKEH LNGNNNDILR SNNLENSDNS NNEANKNITN 300 DNNNGSEGLN HHHNHHHFEN ESHVGVHVGT NGSSSSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-21	207	264	18	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.017G082900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU227236	1e-136	CU227236.1 Populus EST from severe drought-stressed leaves.
GenBank	CU228827	1e-136	CU228827.1 Populus EST from severe drought-stressed leaves.
GenBank	CU229016	1e-136	CU229016.1 Populus EST from severe drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002324056.3	0.0	zinc-finger homeodomain protein 9
Refseq	XP_006373321.2	0.0	zinc-finger homeodomain protein 9
Refseq	XP_024444049.1	0.0	zinc-finger homeodomain protein 9
Swissprot	Q9LHF0	5e-77	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A2K1X512	0.0	A0A2K1X512_POPTR; Uncharacterized protein
STRING	POPTR_0017s11920.1	1e-179	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1979	31	88
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	1e-71	homeobox protein 34

Link Out ? help Back to Top
Phytozome	Potri.017G082900.1
Entrez Gene	7495973

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]