PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G082500.1
Common NamePOPTR_0017s11880g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 323aa    MW: 35732 Da    PI: 7.3716
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G082500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Potri.017G082500.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTSTGLLRCSKSCRLRWTNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding47.34.9e-1567112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T  E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Potri.017G082500.1  67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNFWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-23564IPR009057Homeodomain-like
PROSITE profilePS5129423.882965IPR017930Myb domain
SuperFamilySSF466895.87E-3011108IPR009057Homeodomain-like
SMARTSM007175.3E-141363IPR001005SANT/Myb domain
PfamPF002494.2E-161461IPR001005SANT/Myb domain
CDDcd001673.00E-111661No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2465116IPR009057Homeodomain-like
SMARTSM007178.5E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129418.67466116IPR017930Myb domain
PfamPF002491.7E-1367112IPR001005SANT/Myb domain
CDDcd001671.13E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTSTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNFWNT HLKKKLRKLQ  120
AGQEGQSRDG LSSTGSQQIS RGQWERRLQT DINMARQALC EALSPGKPSS LLTGLKPSCG  180
YEKPATEPIY ASSTENISRL LKGWMISGPK QSLKNSTTQN SFIDTAGADS LSSEGTPDKA  240
DKNGTGLSQA FESLFGFDSF DSSNSDFSQS MSPDTGLFQD ESKPNSSAQV PLSLIERWLF  300
DEGAMQGKDY INEVTIDEDN LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241411627128MYB TRANSFORMING PROTEIN
1mse_C1e-24141164105C-Myb DNA-Binding Domain
1msf_C1e-24141164105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.106100.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G082500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164591e-138AC216459.1 Populus trichocarpa clone POP074-L11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323853.10.0myb-related protein 306
SwissprotP813921e-116MYB06_ANTMA; Myb-related protein 306
TrEMBLB9IJX20.0B9IJX2_POPTR; Uncharacterized protein
STRINGPOPTR_0017s11880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-110myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]