PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G082000.1
Common NamePOPTR_0017s11830g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 401aa    MW: 44825.5 Da    PI: 6.4046
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G082000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.4e-52141421128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLp + ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+
  Potri.017G082000.1  14 MLPGFRFHPTDEELVGFYLKRKIQQRSLPI-ELIKQVDIYKYDPWDLPkELATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDR 103
                         579***************************.89***************445566889********************************** PP

                 NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  Potri.017G082000.1 104 PIYSSdGTRCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 142
                         ****956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5713173IPR003441NAC domain
PROSITE profilePS5100556.90214173IPR003441NAC domain
PfamPF023651.5E-2516142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEEKNDVDKI DDVMLPGFRF HPTDEELVGF YLKRKIQQRS LPIELIKQVD IYKYDPWDLP  60
KELATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSDG TRCIGLKKSL  120
VFYRGRAAKG MKTDWMMHEF RLPSLAEPPP PKKLLDKSLP PNDAWAICRI FKKTNSMAQR  180
ALSHSWVSPV LPETTASDFF AQGAHCTQFS SENMSCTTEI GSNFHLGSNN DFQQASPAGL  240
SVLDIPSYRP INPIVHTSYI FPVSNGDLPN NFLFSPLENS GPIKSTDDAP SMLLNPALMG  300
EAGKASESTE YEGSQQQFNG FSINLLQEMQ GDIGTGDETG LRKNPSSIQD NNLFGTIRSI  360
GFPFSLPSNL PDAWKSNLPW DSPSCPSEMS TTYSTNKCHT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-511617619168NO APICAL MERISTEM PROTEIN
1ut4_B2e-511617619168NO APICAL MERISTEM PROTEIN
1ut7_A2e-511617619168NO APICAL MERISTEM PROTEIN
1ut7_B2e-511617619168NO APICAL MERISTEM PROTEIN
4dul_A2e-511617619168NAC domain-containing protein 19
4dul_B2e-511617619168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G082000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444678.10.0protein FEZ
TrEMBLA0A2K1X4Z90.0A0A2K1X4Z9_POPTR; Uncharacterized protein
STRINGPOPTR_0017s11830.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.12e-99NAC family protein