PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G047300.1 | ||||||||
Common Name | POPTR_0017s07460g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 245aa MW: 27379.3 Da PI: 10.5402 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69 | 4.5e-22 | 16 | 62 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i n+sn vtfskRr g++KKA+EL++LC+aev++i+fs+ k++ + Potri.017G047300.1 16 IPNESNLMVTFSKRRSGLFKKASELCTLCGAEVSIIVFSPGKKVFSF 62 889*************************************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.507 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-29 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.06E-33 | 7 | 83 | No hit | No description |
SuperFamily | SSF55455 | 1.07E-26 | 7 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-17 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-24 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-17 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-17 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MVRKSKGRQK LEMVKIPNES NLMVTFSKRR SGLFKKASEL CTLCGAEVSI IVFSPGKKVF 60 SFGHPSVEKV MERYLSGNIP QTSGAFHLIE AHRNARVHEL NMQLTQVANQ LEVEKKRGEE 120 LDRMRKASQS RNWWEKPLQE LDLAQLQQLR AALQDLKQDV TRHAKQILIQ NSAPQPFIAA 180 NPSTSGNHLF DTRNTGFISN MTVPPFNTNM SGTPFNTNMT ASPFNASSAM PPFGYSLGYG 240 TSFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_B | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_I | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_J | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_A | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_B | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_C | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_D | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_I | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_J | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G047300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011043074.1 | 1e-179 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | B9IJA6 | 0.0 | B9IJA6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s07460.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-58 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G047300.1 |
Entrez Gene | 7461254 |