PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G044500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 221aa MW: 25083.8 Da PI: 8.9161 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.1 | 3.5e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++ rqv+fskRr g++KKA ELS+LCdae+a+++fs tgk++eys+ Potri.017G044500.1 9 KKIDNTTARQVSFSKRRRGLFKKACELSILCDAEIALMVFSATGKFFEYSN 59 68***********************************************95 PP | |||||||
2 | K-box | 46.1 | 2.1e-16 | 91 | 171 | 19 | 99 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +a L+kei + re+R+ GedL+ L+++eL++Le+ +e sl ++ ++K e +l++++ l+ ke++l een++L+++l+ Potri.017G044500.1 91 AVHAMLNKEIAEKTRELRRTRGEDLQGLNMEELEKLEKLIEGSLCRVMETKGEKILKEVDALKSKEQQLIEENQRLTQRLM 171 55678999999999***************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.0E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.343 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-27 | 2 | 72 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.13E-34 | 3 | 68 | No hit | No description |
PRINTS | PR00404 | 1.3E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.078 | 86 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.9E-13 | 94 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MTRKKIPIKK IDNTTARQVS FSKRRRGLFK KACELSILCD AEIALMVFSA TGKFFEYSNS 60 SIGQVIERRN LHPKNLDKFS QPSVELQLDS AVHAMLNKEI AEKTRELRRT RGEDLQGLNM 120 EELEKLEKLI EGSLCRVMET KGEKILKEVD ALKSKEQQLI EENQRLTQRL MNLSKGQGHL 180 LEQGQSSDSM VTNISSNSAY PRQDYDNSCS FLTLGLPFPD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-17 | 1 | 66 | 1 | 66 | MEF2C |
5f28_B | 8e-17 | 1 | 66 | 1 | 66 | MEF2C |
5f28_C | 8e-17 | 1 | 66 | 1 | 66 | MEF2C |
5f28_D | 8e-17 | 1 | 66 | 1 | 66 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.9268 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G044500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144739 | 0.0 | EF144739.1 Populus trichocarpa clone WS01117_K02 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006373017.2 | 1e-161 | MADS-box protein JOINTLESS | ||||
Swissprot | Q9FUY6 | 3e-72 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A2K1X368 | 1e-160 | A0A2K1X368_POPTR; Uncharacterized protein | ||||
STRING | XP_010254524.1 | 1e-90 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF890 | 33 | 106 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-66 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G044500.1 |
Publications ? help Back to Top | |||
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