PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.017G044200.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24604.1 Da PI: 9.8354 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.5 | 1.4e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n+s rqv+fskRr g++KKA+ELS+LCdae+a+++fs tgk++eys+ Potri.017G044200.2 9 KKIDNTSARQVSFSKRRRGLFKKAFELSILCDAEIALMVFSATGKFFEYSN 59 68***********************************************95 PP | |||||||
2 | K-box | 47 | 1.1e-16 | 91 | 171 | 19 | 99 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +a L+kei + re+R+ GedL+ L+++eL++Le+ +eksl ++ ++K e +l++++ l+ ke++l een++L+++l+ Potri.017G044200.2 91 AVHAMLNKEIAEKTRELRRTRGEDLQGLNMEELEKLEKLIEKSLCRVIETKGEKILKEVDALKSKEHQLIEENQRLKQRLM 171 55678999999999***************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.142 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.96E-34 | 2 | 68 | No hit | No description |
SuperFamily | SSF55455 | 1.02E-27 | 3 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.452 | 86 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.5E-13 | 94 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MARKKIQIKK IDNTSARQVS FSKRRRGLFK KAFELSILCD AEIALMVFSA TGKFFEYSNS 60 SIGQVIERRN LHPKNLDTFS QPSVELQLDS AVHAMLNKEI AEKTRELRRT RGEDLQGLNM 120 EELEKLEKLI EKSLCRVIET KGEKILKEVD ALKSKEHQLI EENQRLKQRL MSLSKGQGHL 180 LEQGQSSDSM VNNISSNSAN PRQDYDNYSS FLTLG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-19 | 1 | 66 | 1 | 66 | MEF2C |
5f28_B | 2e-19 | 1 | 66 | 1 | 66 | MEF2C |
5f28_C | 2e-19 | 1 | 66 | 1 | 66 | MEF2C |
5f28_D | 2e-19 | 1 | 66 | 1 | 66 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.9268 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.017G044200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF144739 | 0.0 | EF144739.1 Populus trichocarpa clone WS01117_K02 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006373014.2 | 1e-155 | MADS-box protein JOINTLESS | ||||
Refseq | XP_024444644.1 | 1e-155 | MADS-box protein JOINTLESS | ||||
Refseq | XP_024444645.1 | 1e-155 | MADS-box protein JOINTLESS | ||||
Refseq | XP_024444646.1 | 1e-155 | MADS-box protein JOINTLESS | ||||
Swissprot | Q9FUY6 | 8e-73 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A9P9A5 | 1e-154 | A9P9A5_POPTR; Uncharacterized protein | ||||
STRING | XP_010254524.1 | 1e-87 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22540.1 | 3e-65 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.017G044200.2 |
Publications ? help Back to Top | |||
---|---|---|---|
|