PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G042300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 116aa MW: 12867.2 Da PI: 10.5952 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 42 | 1.3e-13 | 61 | 95 | 1 | 33 |
GATA 1 CsnC..gttkTplWRrgpdgnktLCnaCGlyyrkk 33 C++C g+++Tp+++rgp g++tLCnaCGl+++ k Potri.017G042300.1 61 CTHCriGSKSTPMMHRGPAGPRTLCNACGLKWANK 95 9***555677**********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.4E-6 | 55 | 111 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.42E-8 | 59 | 97 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-9 | 60 | 95 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.03E-10 | 60 | 95 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 61 | 88 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.7E-11 | 61 | 95 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
ASGCSATQGS GQDDSMLETL RVLIHFFNLQ HKHPFFNSVI PKKRVKILYK KNLFPDALCR 60 CTHCRIGSKS TPMMHRGPAG PRTLCNACGL KWANKAWKFL GVPVIKFVNL LQVEA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G042300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216601 | 0.0 | AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3N7HSY0 | 2e-68 | A0A3N7HSY0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s06980.1 | 3e-69 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 3e-17 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G042300.1 |