PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G042200.2
Common NamePOPTR_0017s06970g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 384aa    MW: 43298 Da    PI: 4.867
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G042200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.22.9e-15217253135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg +   Tp +Rrgp g++tLCnaCGl+++ kg+
  Potri.017G042200.2 217 CQHCGISAkdTPAMRRGPAGPRTLCNACGLMWANKGT 253
                         *****88778************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.05580115IPR010399Tify domain
SMARTSM009791.1E-480115IPR010399Tify domain
PfamPF062007.8E-884114IPR010399Tify domain
PfamPF062032.9E-16148190IPR010402CCT domain
PROSITE profilePS5101713.314148190IPR010402CCT domain
SMARTSM004011.3E-10211264IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-11215267No hitNo description
CDDcd002022.11E-14216260No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14216258IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440217244IPR000679Zinc finger, GATA-type
PfamPF003205.1E-13217253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MIKKMELVNH QRQKKGRKGR DHHNRGVMQI EGVDYDYGYG FDDGMMEMIN GGVVEEVRQI  60
NTNSNYSGVV IGNRNDRVVE TTRTSELTIA FEGEVYVFPA VTPSKVQAVL FLLGEPETST  120
IAPNSDFFLQ QNARSAGDAS QGLKFSRRIA SLERFREKRK ERCFEKKVRY TCRKEVAQRM  180
HRKKGQFASS NDCYSTDTGN WEPSNSMPNP ESLLLRCQHC GISAKDTPAM RRGPAGPRTL  240
CNACGLMWAN KGTLRDLSKG GRHISFNQNE PVTPDFKPLN MELENPFANP EEEESQEESK  300
PVPLESENSI RPNEQDMLET DKNVPDPLPM HVENSSVNLD DEDFENTLDE LGDVSGSEFE  360
IPEHFDDQVH IEDSSTGTEW HGT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G042200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166011e-177AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445181.10.0GATA transcription factor 19 isoform X1
SwissprotQ8GXL71e-57GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2K1X3250.0A0A2K1X325_POPTR; Uncharacterized protein
STRINGPOPTR_0017s06970.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.28e-52ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]