PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G042200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 407aa    MW: 46027.5 Da    PI: 5.1752
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G042200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.13.2e-15251287135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg +   Tp +Rrgp g++tLCnaCGl+++ kg+
  Potri.017G042200.1 251 CQHCGISAkdTPAMRRGPAGPRTLCNACGLMWANKGT 287
                         *****88778************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.055114149IPR010399Tify domain
SMARTSM009791.1E-4114149IPR010399Tify domain
PfamPF062008.4E-8118148IPR010399Tify domain
PfamPF062033.2E-16182224IPR010402CCT domain
PROSITE profilePS5101713.314182224IPR010402CCT domain
SMARTSM004011.3E-10245298IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-11249301No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14250292IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.78E-14250294No hitNo description
PfamPF003205.5E-13251287IPR000679Zinc finger, GATA-type
PROSITE patternPS003440251278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
KTIKIKVYYF IARNFTYRER EGGWEGGGAL FLVGMIKKME LVNHQRQKKG RKGRDHHNRG  60
VMQIEGVDYD YGYGFDDGMM EMINGGVVEE VRQINTNSNY SGVVIGNRND RVVETTRTSE  120
LTIAFEGEVY VFPAVTPSKV QAVLFLLGEP ETSTIAPNSD FFLQQNARSA GDASQGLKFS  180
RRIASLERFR EKRKERCFEK KVRYTCRKEV AQRMHRKKGQ FASSNDCYST DTGNWEPSNS  240
MPNPESLLLR CQHCGISAKD TPAMRRGPAG PRTLCNACGL MWANKGTLRD LSKGGRHISF  300
NQNEPVTPDF KPLNMELENP FANPEEEESQ EESKPVPLES ENSIRPNEQD MLETDKNVPD  360
PLPMHVENSS VNLDDEDFEN TLDELGDVSG SEFEIPEHFD DQVVVF*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G042200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166010.0AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445181.10.0GATA transcription factor 19 isoform X1
SwissprotQ8GXL72e-57GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A3N7G4330.0A0A3N7G433_POPTR; Uncharacterized protein
STRINGPOPTR_0017s06970.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.29e-52ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]