PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G027400.1
Common NamePOPTR_0017s05610g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 425aa    MW: 46385.2 Da    PI: 6.5164
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G027400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.71.6e-10224282563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l+se+
  Potri.017G027400.1 224 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTSEN 282
                         9***********************************************99999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-16220284IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.99222285IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-10224280No hitNo description
PfamPF001705.2E-8224282IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-10224275No hitNo description
CDDcd147031.58E-25225274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDKDKSASHH SSGLPPPPGR YSSFSPSGSS FNLKPEQSPS TFPPMAPGSS PDPNHFGHGS  60
DSNRFSHDIS RMPDNPPKNL GHRRAHSEIL TLPDDISFDS DLGVVGGGAD GPTFSDETEE  120
DLLSMYLDMD KFNSSSATST FQVGESLAPA MAAQAMAPLP AAVSLGAGPS ERPRVRHQHS  180
QSMDGSTTIK PEMLMSGSEE ASPADSKKAV SAAKLAELAL IDPKRAKRIW ANRQSAARSK  240
ERKMRYIAEL ERKVQTLQTE ATSLSAQLTL LQRDTNGLTS ENSELKLRLQ TMEQQVHLQD  300
ALNDALKEEI QHLKVLTGQT PNGGPMMNYA SFGGGQQLYP NNQAMHTFLA AQQFQQLQIH  360
SQKQQQQQQQ QQQFQLHQLQ QQQLQQQQEQ QQQQQGGDLK MRGSLTSSSQ KDNGSEANSS  420
SSKD*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G027400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372845.10.0probable transcription factor PosF21
SwissprotQ040881e-160POF21_ARATH; Probable transcription factor PosF21
TrEMBLU5FMQ70.0U5FMQ7_POPTR; Uncharacterized protein
STRINGPOPTR_0017s05610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55173249
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-167bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]