PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.017G018500.1

Common Name

POPTR_0017s04980g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 988aa MW: 108478 Da PI: 5.3594

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.017G018500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.2e-29	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Potri.017G018500.1 598 AEKTVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 649 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.086	581	669	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-26	601	649	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.1E-24	885	964	No hit	No description
SuperFamily	SSF54277	2.26E-21	885	969	No hit	No description
PROSITE profile	PS51745	20.772	885	967	IPR000270	PB1 domain
SMART	SM00666	8.0E-22	885	967	IPR000270	PB1 domain
CDD	cd06407	8.86E-31	886	966	No hit	No description
Pfam	PF00564	1.5E-17	886	966	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 988 aa Download sequence Send to blast
MENPFSSKEK GTGYWASPRA QMDVVTPLDG SPRNLLLEDP FNNFSELMNF DIYAELCNNP 60 SAMDQMLDPF GMPSFPSTSS PSFDPGSFAA LNSAPVQNTT NAAGTSYNDG DKVVLQQINS 120 HFCYPSDSID TDDLGAKHSN DAGQQNRFSN LTDHIIARPL APSLDERMLR ALSLLKVSSG 180 GGFLAQVWVP RRIGNQYMLS TTDQPYLLDE MLAGFREVSR TFTFPAEVKP GLPLGLPGRV 240 FISKVPEWTS NVIYYSKGEY LRAKQAADHE VRGSFALPIF DPDEMSCCAV LELVTMKEKP 300 DFDSEMENVC HALEAVNLRS TAPPRLLPQC LSSNKRAALS EIADVLRAVC HAHRLPLALT 360 WIPCNYTEEA LDEIVKVRVR EANSRSSGKC VLCIEDTACY VNDRKMQGFV HACAEHYIEE 420 GQGLAGKALQ SNHPFFFSDV KAYDITEYPL VHHARKYGLN AAVAIRLRST YTGDEDYILE 480 FFLPVNIEGS SDQQLLLNNL SGTMQRICKS LRTVSETEFV RQECSEDGLP KEAVPSVRPM 540 SISKGSSQTA ISEGNLNSAA KMLFNMSGSK NDQTESNSSN EQKMSGSRRQ VEKKRSTAEK 600 TVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVL 660 DTVQGVEGGL KFDPTAGGFI AGGAMMQEFD LRNGFVFQEK NLSNRNSDPA NHDVVSVRPA 720 PCTDGNNSTV KVENDECHIG SRGVLKESCV HVIDCSEDAK SAAVDAGLCE QANFGSGPWA 780 CLENDITVSL AKAGNKWGMK NGGIILENLD SHFVSQSSSS FAKEMDTKME GDDGNVEHNQ 840 PTSSSMTDSS NGTGSMMHGS ISSSSSFEER KHSKVQTSFC DGDLKITVKA SYKEDIIRFK 900 FDPSAGCLQL YKEVSNRFKL QTGTFQLKYL DDEEEWVLLV SDSDLQECLE IMEYVGTRNV 960 KFLVRDAVAP FVMGSSGSSN SFLVGSS*

Sequence ? help Back to Top

Protein Sequence Length: 988 aa Download sequence Send to blast

MENPFSSKEK GTGYWASPRA QMDVVTPLDG SPRNLLLEDP FNNFSELMNF DIYAELCNNP  60
SAMDQMLDPF GMPSFPSTSS PSFDPGSFAA LNSAPVQNTT NAAGTSYNDG DKVVLQQINS  120
HFCYPSDSID TDDLGAKHSN DAGQQNRFSN LTDHIIARPL APSLDERMLR ALSLLKVSSG  180
GGFLAQVWVP RRIGNQYMLS TTDQPYLLDE MLAGFREVSR TFTFPAEVKP GLPLGLPGRV  240
FISKVPEWTS NVIYYSKGEY LRAKQAADHE VRGSFALPIF DPDEMSCCAV LELVTMKEKP  300
DFDSEMENVC HALEAVNLRS TAPPRLLPQC LSSNKRAALS EIADVLRAVC HAHRLPLALT  360
WIPCNYTEEA LDEIVKVRVR EANSRSSGKC VLCIEDTACY VNDRKMQGFV HACAEHYIEE  420
GQGLAGKALQ SNHPFFFSDV KAYDITEYPL VHHARKYGLN AAVAIRLRST YTGDEDYILE  480
FFLPVNIEGS SDQQLLLNNL SGTMQRICKS LRTVSETEFV RQECSEDGLP KEAVPSVRPM  540
SISKGSSQTA ISEGNLNSAA KMLFNMSGSK NDQTESNSSN EQKMSGSRRQ VEKKRSTAEK  600
TVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVL  660
DTVQGVEGGL KFDPTAGGFI AGGAMMQEFD LRNGFVFQEK NLSNRNSDPA NHDVVSVRPA  720
PCTDGNNSTV KVENDECHIG SRGVLKESCV HVIDCSEDAK SAAVDAGLCE QANFGSGPWA  780
CLENDITVSL AKAGNKWGMK NGGIILENLD SHFVSQSSSS FAKEMDTKME GDDGNVEHNQ  840
PTSSSMTDSS NGTGSMMHGS ISSSSSFEER KHSKVQTSFC DGDLKITVKA SYKEDIIRFK  900
FDPSAGCLQL YKEVSNRFKL QTGTFQLKYL DDEEEWVLLV SDSDLQECLE IMEYVGTRNV  960
KFLVRDAVAP FVMGSSGSSN SFLVGSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.017G018500.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU231638	1e-108	CU231638.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024444955.1	0.0	protein NLP8-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A2K1X210	0.0	A0A2K1X210_POPTR; Uncharacterized protein
TrEMBL	A0A385JIQ8	0.0	A0A385JIQ8_POPTO; Plant regulator RWP-RK family protein
STRING	POPTR_0017s04980.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Potri.017G018500.1
Entrez Gene	18106829

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]