PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G016700.1
Common NamePOPTR_0017s04800g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 300aa    MW: 33692 Da    PI: 9.0634
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G016700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.61.8e-34591991128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 
                         lp+G++F+Ptd+el+ e+L+ kv++++      ++  e+i+++d    i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+    
  Potri.017G016700.1  59 LPAGVKFDPTDQELL-EHLEGKVKSDTrkvhplID--EFIPTIDgengICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKvhtd 145
                         799************.99*******9966643322..23444444445**********.555555677******************74555 PP

                 NAM  78 tk..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         t+  + +W++tgk+++vl+ +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Potri.017G016700.1 146 TEggETRWHKTGKTRPVLV-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 199
                         3344667************.9*************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-3952218IPR003441NAC domain
PROSITE profilePS5100534.01859218IPR003441NAC domain
PfamPF023655.2E-1660199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MTWCNDCNDV QTIERSSPPP CNASVIAQRH KECLIRSCPS CGHQIKCQDQ ARIHDLPGLP  60
AGVKFDPTDQ ELLEHLEGKV KSDTRKVHPL IDEFIPTIDG ENGICYTHPE KLPGVSKDGL  120
IRHFFHRPSK AYTTGTRKRR KVHTDTEGGE TRWHKTGKTR PVLVGGKVKG YKKILVLYTN  180
YGKQRKPEKT NWVMHQYHLG NNEEEKDGEL VVSKVFYQTQ PRQCGSLIKD SVSVPSKLKV  240
QSSGHEGSNL KNSTTLVEYY HPSSFISFDQ SGQNRSTNPN PPQQLLSHFA VHDGSSFIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-125919915140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G016700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707930.0AB970793.1 Populus nigra PniNAC122 mRNA for NAC transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444706.10.0NAC domain-containing protein 73
RefseqXP_024444707.10.0NAC domain-containing protein 73
SwissprotO494591e-132NAC73_ARATH; NAC domain-containing protein 73
TrEMBLB9MYC70.0B9MYC7_POPTR; NAC family protein
STRINGPOPTR_0017s04800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-120NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]