PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.017G016200.1

Common Name

POPTR_0017s04760g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 1769aa MW: 197881 Da PI: 5.5367

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.017G016200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	9.3e-19	28	84	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t++qle+Le+ ++ + yps++ r+eL+ +lgL++rq ++WF+ rR k++k Potri.017G016200.1 28 KSKRKMKTASQLEILEKTYAADTYPSEAVRAELSVQLGLSDRQLQMWFCHRRLKDRK 84 679****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-17	14	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.98E-16	23	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.763	25	85	IPR001356	Homeobox domain
SMART	SM00389	1.5E-16	27	89	IPR001356	Homeobox domain
Pfam	PF00046	2.5E-16	28	84	IPR001356	Homeobox domain
CDD	cd00086	2.44E-14	28	84	No hit	No description
PROSITE profile	PS50827	16.381	560	619	IPR018501	DDT domain
SMART	SM00571	1.8E-21	560	619	IPR018501	DDT domain
Pfam	PF02791	1.7E-16	561	616	IPR018501	DDT domain
Pfam	PF05066	5.9E-14	742	809	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.1E-9	958	999	IPR028942	WHIM1 domain
Pfam	PF15613	1.2E-13	1141	1213	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1769 aa Download sequence Send to blast
MEEASSGGGS GGVEVEEKKK TPGEGESKSK RKMKTASQLE ILEKTYAADT YPSEAVRAEL 60 SVQLGLSDRQ LQMWFCHRRL KDRKAPLVKR PHKESPSPAG MPGGVEMGVG TEVGNEHGSG 120 SASLSGLGVD SRRAVGRPTG VAVPRISADV QAMKRYYEPQ QSVAELRAIA FVEAQLGEPL 180 REDGPILGIE FDPLPPDAFG APIRSATLGQ QKQPVRIFET NLYERPDIKP IKGTTRTLHE 240 YQFLPQQPTV KAEAYERAAP SFQYGSPADG HNTKTGSLSA TRSFMHANEQ VSSGYGFSSQ 300 VPSLTLMPQE GRQGHLLPSA TGEYENTSQK IPFTNVGMDV QIGAHPITAL DNPFMSSDQR 360 VTHDENALRM ERKRKSEEAR IAREVEAHEK RIRKELEKQD ILNRKREEQI RKEMERHDRE 420 RRKEEERLLR EKQREVERHQ REQRRELERR EKFLQKESIR VEKMRQKEEL RRQREAARQK 480 AASERAIARR MAKESLELVE DERLELMELA ASSKGLPSII PLDFETLQNL DLFRDKLTKF 540 PPKSVLLKRP FLIQPWNGSE ENIGNLLMVW RFLITFVDVL GIWPFTLDEF VQAFHDYEPR 600 LLGEIHISLL KSIIKDIEDV ARTPATSLGP NQNSAANPGG GHPQIVEGAY AWGFDIRSWQ 660 RHLNPLTWPE ILRQFGLSAG FGPQLKKRNV EQAYLCDDNE GNDGEDVITN LRNGAAVENA 720 FAIMQERGFS NPRRSRHRLT PGTVKFASFH VLSLEGSKGL TILEVADKIQ KSGLRDLTTS 780 KTPEASIAAA LSRDSKLFER TAPSTYCVRP PYRKDPADAE AILSAARERI RVFKSGIVDG 840 EDADDAERDE DSESDVAEDP DIDDLGTELN SKKEAHDSPE VNEFNGKTLL MNGKESGDVL 900 KTPQVSLVNV GAGLTSLHSE GTNEVRGVAS SIDRSVDVAE ICTTPVQGDV DIDESNPGEP 960 WVQGLADGEY SDLSVEERLS ALVALIGVAI EGNSIRIVLE ERLEAANALK KQMWAEAQLD 1020 KRRMKEEFVM RTQYSSFTGN KMELNLTISA SEGRQSPMVN VDDRSNGMSV NASFQQERSS 1080 DQQSDMNYLT NMSSEGNMQM QDLSADTDNL PYQQTGHANE KSRSQLKSVI GHRAEEMYVY 1140 RSLPLGQDRR RNRYWQFTTS ASRNDPGCGR IFVELHDGRW RVIDSEEGFN ALLSSLDVRG 1200 VRESHLHAML HKIEVPFKET LRKRMLHAST EGKSKGPIKA EAVETAAGIE CGSGMDSPQS 1260 TVCIPDSDMS ETSTSFTIEL GRNEIEKNHA LKRFQDFEKW MWKECFKSSV LCAMKYGKKR 1320 CTQRLGVCDY CHDTYLSEDN HCPSCHKTYD ASQVGLNISE HVAHCERKLK VDPDSALCSS 1380 SFPLRIRLLK LLLALIEVSV LPEALQPVWT DDYRKSWGMK LQSSSSVEDL LQILTLLEGG 1440 MKRDYLSSNY ETSSELLRSS DPSGCAAYGS FNTETVPVLP WLPQTTAAVA LRVIEFDASI 1500 SYMLHQKPEA HKDRSTRSFI KLPSKYAAMK NTPDHEITES SRKAGLFQED NWVDVGIGLA 1560 GLGREQGIRG RGRGRTRGGR SQTRIIGSRS VSSKRSAAKS SDRLGKALSW KGRPRGRGGC 1620 KRGRRSVRSR QKAVKQASDF IPERKIPQET IREQSTNCLG RDDWNGDETR FVEDAENASS 1680 SERSEYDDEN ENILASGDEY DNMRVDDYAG GFNGKSDDLL EGSDYVMDGN EDDDDAVNED 1740 ELGDLDVEEY INGDPDDGTE SSSSDFID*

Sequence ? help Back to Top

Protein Sequence Length: 1769 aa Download sequence Send to blast

MEEASSGGGS GGVEVEEKKK TPGEGESKSK RKMKTASQLE ILEKTYAADT YPSEAVRAEL  60
SVQLGLSDRQ LQMWFCHRRL KDRKAPLVKR PHKESPSPAG MPGGVEMGVG TEVGNEHGSG  120
SASLSGLGVD SRRAVGRPTG VAVPRISADV QAMKRYYEPQ QSVAELRAIA FVEAQLGEPL  180
REDGPILGIE FDPLPPDAFG APIRSATLGQ QKQPVRIFET NLYERPDIKP IKGTTRTLHE  240
YQFLPQQPTV KAEAYERAAP SFQYGSPADG HNTKTGSLSA TRSFMHANEQ VSSGYGFSSQ  300
VPSLTLMPQE GRQGHLLPSA TGEYENTSQK IPFTNVGMDV QIGAHPITAL DNPFMSSDQR  360
VTHDENALRM ERKRKSEEAR IAREVEAHEK RIRKELEKQD ILNRKREEQI RKEMERHDRE  420
RRKEEERLLR EKQREVERHQ REQRRELERR EKFLQKESIR VEKMRQKEEL RRQREAARQK  480
AASERAIARR MAKESLELVE DERLELMELA ASSKGLPSII PLDFETLQNL DLFRDKLTKF  540
PPKSVLLKRP FLIQPWNGSE ENIGNLLMVW RFLITFVDVL GIWPFTLDEF VQAFHDYEPR  600
LLGEIHISLL KSIIKDIEDV ARTPATSLGP NQNSAANPGG GHPQIVEGAY AWGFDIRSWQ  660
RHLNPLTWPE ILRQFGLSAG FGPQLKKRNV EQAYLCDDNE GNDGEDVITN LRNGAAVENA  720
FAIMQERGFS NPRRSRHRLT PGTVKFASFH VLSLEGSKGL TILEVADKIQ KSGLRDLTTS  780
KTPEASIAAA LSRDSKLFER TAPSTYCVRP PYRKDPADAE AILSAARERI RVFKSGIVDG  840
EDADDAERDE DSESDVAEDP DIDDLGTELN SKKEAHDSPE VNEFNGKTLL MNGKESGDVL  900
KTPQVSLVNV GAGLTSLHSE GTNEVRGVAS SIDRSVDVAE ICTTPVQGDV DIDESNPGEP  960
WVQGLADGEY SDLSVEERLS ALVALIGVAI EGNSIRIVLE ERLEAANALK KQMWAEAQLD  1020
KRRMKEEFVM RTQYSSFTGN KMELNLTISA SEGRQSPMVN VDDRSNGMSV NASFQQERSS  1080
DQQSDMNYLT NMSSEGNMQM QDLSADTDNL PYQQTGHANE KSRSQLKSVI GHRAEEMYVY  1140
RSLPLGQDRR RNRYWQFTTS ASRNDPGCGR IFVELHDGRW RVIDSEEGFN ALLSSLDVRG  1200
VRESHLHAML HKIEVPFKET LRKRMLHAST EGKSKGPIKA EAVETAAGIE CGSGMDSPQS  1260
TVCIPDSDMS ETSTSFTIEL GRNEIEKNHA LKRFQDFEKW MWKECFKSSV LCAMKYGKKR  1320
CTQRLGVCDY CHDTYLSEDN HCPSCHKTYD ASQVGLNISE HVAHCERKLK VDPDSALCSS  1380
SFPLRIRLLK LLLALIEVSV LPEALQPVWT DDYRKSWGMK LQSSSSVEDL LQILTLLEGG  1440
MKRDYLSSNY ETSSELLRSS DPSGCAAYGS FNTETVPVLP WLPQTTAAVA LRVIEFDASI  1500
SYMLHQKPEA HKDRSTRSFI KLPSKYAAMK NTPDHEITES SRKAGLFQED NWVDVGIGLA  1560
GLGREQGIRG RGRGRTRGGR SQTRIIGSRS VSSKRSAAKS SDRLGKALSW KGRPRGRGGC  1620
KRGRRSVRSR QKAVKQASDF IPERKIPQET IREQSTNCLG RDDWNGDETR FVEDAENASS  1680
SERSEYDDEN ENILASGDEY DNMRVDDYAG GFNGKSDDLL EGSDYVMDGN EDDDDAVNED  1740
ELGDLDVEEY INGDPDDGTE SSSSDFID*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.017G016200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU231346	0.0	CU231346.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024444637.1	0.0	homeobox-DDT domain protein RLT2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2K1X1X3	0.0	A0A2K1X1X3_POPTR; Uncharacterized protein
STRING	POPTR_0017s04760.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69
Representative plant	OGRP1577	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Potri.017G016200.1
Entrez Gene	18106807