PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G012900.1 | ||||||||
Common Name | POPTR_0017s04460g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SBP | ||||||||
Protein Properties | Length: 111aa MW: 12592.6 Da PI: 9.9532 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 29.9 | 1.5e-09 | 73 | 103 | 1 | 31 |
--SSTT-----TT--HHHHHTT--HHHHT-S CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskap 31 +Cq+e+C +dl+ ak+yh++hkv e h+k + Potri.017G012900.1 73 CCQIENCIVDLTYAKQYHNKHKVFEYHTKGS 103 6***************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.2E-9 | 67 | 101 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 10.203 | 71 | 110 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.71E-8 | 72 | 103 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MEGKLKQIRM VMGRVVIKKE SVNESSNDEG YKQNKVEFIK DEFFKRNRKK IMVVTSGCGS 60 GRKVSDGGGG MKCCQIENCI VDLTYAKQYH NKHKVFEYHT KGSGYACNWK * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G012900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210656 | 0.0 | AC210656.1 Populus trichocarpa clone POP061-K03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309744.2 | 2e-17 | squamosa promoter-binding protein 1 | ||||
Refseq | XP_011047666.1 | 6e-17 | PREDICTED: squamosa promoter-binding protein 2-like isoform X1 | ||||
Refseq | XP_011047667.1 | 2e-17 | PREDICTED: squamosa promoter-binding protein 2-like isoform X2 | ||||
TrEMBL | A0A2K1X1R4 | 2e-74 | A0A2K1X1R4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s04460.1 | 2e-72 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 6e-08 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G012900.1 |
Entrez Gene | 18106778 |