PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G121800.1
Common NamePOPTR_0016s12940g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 379aa    MW: 42456.1 Da    PI: 9.3827
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G121800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.25.8e-3163116255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         prlrWtpeLH +F++ave+LGG+e+AtPk +l+lm+v+gL+++hvkSHLQ+YR+
  Potri.016G121800.1  63 PRLRWTPELHLCFMKAVERLGGQERATPKLVLQLMNVNGLSIAHVKSHLQMYRS 116
                         8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-2959117IPR009057Homeodomain-like
PROSITE profilePS5129414.81559119IPR017930Myb domain
SuperFamilySSF466891.02E-1462117IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-2363118IPR006447Myb domain, plants
PfamPF002491.8E-964115IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEESNHTGCS KTSASLQDHD ESAGGENDEE ESRPKKGGSS SNSTVEESEN KSSVRPYVRS  60
KLPRLRWTPE LHLCFMKAVE RLGGQERATP KLVLQLMNVN GLSIAHVKSH LQMYRSKKVD  120
DPSQGMADHR HLVESGDRNI YNLSQLPMLQ GYNQYQRQNS SFRYGDASWN AREHFIYNPH  180
VGRCVIDRTR PGSYGTVAER IYGSSNNSNW SANSGKFQMG ASSLIAQSKW KNEELKGDQQ  240
LPQSLHNNRF WQPQPSPSLD VSPLVLPQMQ TKVGESSSTH FKRFLPSDSK STTSTVQEWK  300
TLKRKASDCN LDLDLSLKLT PTKDHDSNQR SLEDSTKVNS ELSLSLYSPS SSKLSRLKRE  360
GDGNKDHGKR ASTLDLTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-1764118458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-1764118458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-1764118357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1764118357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1764118357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1764118357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-1764118458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-1764118458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-1764118458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-1764118458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-1764118458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-1764118458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G121800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165440.0AC216544.1 Populus trichocarpa clone POP016-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323602.30.0transcription factor HHO1
RefseqXP_024443323.10.0transcription factor HHO1
RefseqXP_024443324.10.0transcription factor HHO1
TrEMBLA0A2K1XEP60.0A0A2K1XEP6_POPTR; Uncharacterized protein
STRINGPOPTR_0016s12940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-55G2-like family protein