PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G118900.1 | ||||||||
Common Name | POPTR_0016s12640g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 196aa MW: 22558.6 Da PI: 8.458 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.9 | 1.1e-22 | 29 | 74 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +++ +snr+vtfskR+ng++KKA ELS+LC+ae avi+fs++ kl+ Potri.016G118900.1 29 KVQKESNRYVTFSKRKNGLFKKATELSTLCGAETAVIVFSEHRKLF 74 56789************************************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.796 | 20 | 80 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-28 | 20 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.02E-32 | 21 | 89 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-26 | 21 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-20 | 22 | 42 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-22 | 29 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-20 | 42 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-20 | 57 | 78 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MDATDSNRQR HQQETRRTSK GRQKIEIKKV QKESNRYVTF SKRKNGLFKK ATELSTLCGA 60 ETAVIVFSEH RKLFSCGQPD VDKVLDRYLV ETEKVPSNFP PVTNNNIESQ LANKQEYARS 120 LKRLEEEQTV AKMIGNMNDM NEGGFWWDLP IDNMEQDELE AYKESMEQLK KNVITRLGLI 180 EANNAPTTVI CERKI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 5e-18 | 21 | 88 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 5e-18 | 21 | 88 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 5e-18 | 21 | 88 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 5e-18 | 21 | 88 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3kov_A | 6e-18 | 21 | 88 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3kov_B | 6e-18 | 21 | 88 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3kov_I | 6e-18 | 21 | 88 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3kov_J | 6e-18 | 21 | 88 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_A | 5e-18 | 21 | 88 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 5e-18 | 21 | 88 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 5e-18 | 21 | 88 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 5e-18 | 21 | 88 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_A | 6e-18 | 21 | 88 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_B | 6e-18 | 21 | 88 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_C | 6e-18 | 21 | 88 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_D | 6e-18 | 21 | 88 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_I | 6e-18 | 21 | 88 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_J | 6e-18 | 21 | 88 | 1 | 68 | Myocyte-specific enhancer factor 2A |
6bz1_A | 8e-18 | 21 | 88 | 2 | 69 | MEF2 CHIMERA |
6bz1_B | 8e-18 | 21 | 88 | 2 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G118900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323594.2 | 1e-137 | agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_024443414.1 | 1e-137 | agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_024443416.1 | 1e-137 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2K1XEI5 | 1e-143 | A0A2K1XEI5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s12640.1 | 1e-137 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-36 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G118900.1 |
Entrez Gene | 7466086 |