PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G099900.1 | ||||||||
Common Name | POPTR_0016s10610g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 310aa MW: 34688.3 Da PI: 6.1084 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.2 | 5.4e-31 | 118 | 174 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 Dgy+WrKYGqK++k+s++prsYYrCt ++C +kk+vers+edp++++itYeg H h Potri.016G099900.1 118 GDGYKWRKYGQKSIKNSTHPRSYYRCTNRRCGAKKQVERSSEDPDTLVITYEGLHLH 174 5******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-28 | 110 | 174 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.993 | 112 | 177 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-26 | 113 | 174 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.3E-34 | 117 | 176 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-25 | 119 | 174 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MEGEVISSSW FSESEEDELV RELLDDVSPF FFLPEERNQS KAASPTPRNE EAMNQLISKV 60 YSGPTKQDIE NALSMTSRRD QPQPVSQARF SLLQKGLSKI ENNKYTVKLK SCDNGVAGDG 120 YKWRKYGQKS IKNSTHPRSY YRCTNRRCGA KKQVERSSED PDTLVITYEG LHLHFSHPYF 180 LSNQPQHVDP PSKKPKRTIS EDEFQAHETR QPPEQGQECS THVTSPGSLP SSSTADDYMQ 240 ESDLEAMGPR GLLEDVVPFM IRNPSNYNVS SYSSSSSYRS PPTSPSSSLS WSPILSHSCF 300 DVGLNTSIG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-18 | 119 | 174 | 19 | 74 | Probable WRKY transcription factor 4 |
2ayd_A | 2e-18 | 116 | 174 | 13 | 71 | WRKY transcription factor 1 |
2lex_A | 2e-18 | 119 | 174 | 19 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G099900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN117930 | 0.0 | JN117930.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY34) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323509.1 | 0.0 | probable WRKY transcription factor 49 | ||||
TrEMBL | B9IFV9 | 0.0 | B9IFV9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s10610.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7118 | 34 | 49 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 4e-45 | WRKY DNA-binding protein 49 |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G099900.1 |
Entrez Gene | 7468810 |