PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G096300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 471aa    MW: 53990 Da    PI: 6.3868
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G096300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.32.4e-2494193186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 
                         +Wt+++v++Li a+ +++++++++              +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ ++++++
  Potri.016G096300.1  94 KWTDHMVRLLIMAVFYIGDDVGSEGsdpigkkkpgglaQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVE 184
                         7*******************997533666777888888**********************************************559**** PP

            trihelix  78 tcpyfdqle 86 
                         +  ++d ++
  Potri.016G096300.1 185 NQNLLDTMD 193
                         *99999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2192218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MGSGMLGLEL PLHQPENPQN PNHMNHPQVL AYTDHESDHR QHSQQSVKHA YPYASSTKPK  60
QLLSPLSDED EPSFTGDDNT TDGKRKMSPW QRMKWTDHMV RLLIMAVFYI GDDVGSEGSD  120
PIGKKKPGGL AQKKGKWKSV SRAMMEKGFY VSPQQCEDKF NDLNKRYKRV NDILGKGTAC  180
RVVENQNLLD TMDLSPKMKE EVRKLLNSKH LFFREMCAYH NSCGHAPSWV AFGSNHSPEM  240
ATGPSPAHAQ QHQRCSHSTE NAQVVTNSRT ETEGSKMAKR AINEEDEVED DDDDDSDNDE  300
DDCEDDGDEA IEGNSRHQNG HGQGDEDNRD EKSSRKRPRK DVFSATSPLM QQLNGEIMNV  360
LQDVAKSSWE KKHWMRLRLM QLEEQQVSYQ CQAYELEKQR LKWVKFSSKK EREMEGVKLE  420
NERRRLENER MVLIVRKKEL ELLDTQHQQQ QQQQQQLPSN KRSDTSSIAG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G096300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442997.10.0uncharacterized protein LOC18106263 isoform X2
TrEMBLA0A2K1XDC90.0A0A2K1XDC9_POPTR; Uncharacterized protein
STRINGcassava4.1_006702m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Representative plantOGRP9974610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-79sequence-specific DNA binding transcription factors