PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G094800.1 | ||||||||
Common Name | POPTR_0016s11350g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 201aa MW: 21554.2 Da PI: 9.7685 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 106.5 | 4.2e-33 | 50 | 121 | 5 | 74 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 +++++++hTkv gR+RRvR++a++aar+F+L++eLG+ +d++tieWLl+ a+++i++ tgt+++++ + Potri.016G094800.1 50 TSQSKDRHTKVHGRGRRVRMPALTAARIFQLTRELGHRSDGETIEWLLRHAEASIIASTGTGTIPSIPIstT 121 5689*********************************************************88888443211 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.3E-28 | 52 | 129 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.561 | 53 | 107 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MASETVLYNF SSTSNSQHQQ PSPNNNNSVV PSPTTGGSQS KLTHPRKSTT SQSKDRHTKV 60 HGRGRRVRMP ALTAARIFQL TRELGHRSDG ETIEWLLRHA EASIIASTGT GTIPSIPIST 120 TVGSTPISSS SPSPSASCKV HPVNCIGPEM FSLLTAPSSR LDLDYRHMPF TALLLQPMAA 180 TVAVDAEEGR QQELTGEHKM * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269|PubMed:9338963}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G094800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209228 | 0.0 | AC209228.1 Populus trichocarpa clone POP075-L19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006373942.1 | 1e-146 | transcription factor PCF1 | ||||
Swissprot | O23875 | 2e-34 | PCF1_ORYSJ; Transcription factor PCF1 | ||||
TrEMBL | B9N7J5 | 1e-144 | B9N7J5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s11350.1 | 1e-145 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 2e-29 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G094800.1 |
Entrez Gene | 18106274 |