PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G090300.1 | ||||||||
Common Name | POPTR_0016s09150g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 701aa MW: 78045 Da PI: 8.3301 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.9 | 3.8e-23 | 124 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+lt+sd+++ g +++p+ +ae + ++ + tl +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+vvF Potri.016G090300.1 124 FAKTLTQSDANNGGGFSVPRYCAEMIfprldytADPPVQ--TLLAKDVHGETWKFRHIYRGTPRRHLLTTGWSPFVNHKKLVAGDSVVFL- 211 89*********************999****997555555..8999*********************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++ l+v+v+r+ Potri.016G090300.1 212 -RAENGDLCVGVRRA 225 .4488889****996 PP | |||||||
2 | Auxin_resp | 101.7 | 9.7e-34 | 294 | 376 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a a+++ +Fe vY+Pra t+eF vk++ v++ ++++++ GmRfkmafetedss++++ +Gtv +v+d+dp+ Wp+S+Wr+L+ Potri.016G090300.1 294 AVLAANGLPFETVYYPRANTPEFFVKASLVKTVMQIRWCSGMRFKMAFETEDSSRISWfMGTVCSVQDADPLCWPGSPWRLLQ 376 667899***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.1E-37 | 114 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.11E-30 | 118 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.94E-21 | 123 | 224 | No hit | No description |
PROSITE profile | PS50863 | 12.802 | 124 | 226 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.2E-21 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.7E-21 | 124 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-28 | 293 | 376 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 15.06 | 619 | 697 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 701 aa Download sequence Send to blast |
MITFMEAKEI LKEEADKCLD SQLWHACAGG MVQMPAVNSK VFYFPQGHAE HACEPVDFRN 60 LPGASHTLCR VSAIKFMADP ETDEVFAKIR LVPINSNEID LDDQEVAVNG EKEAAHDNKK 120 PVSFAKTLTQ SDANNGGGFS VPRYCAEMIF PRLDYTADPP VQTLLAKDVH GETWKFRHIY 180 RGTPRRHLLT TGWSPFVNHK KLVAGDSVVF LRAENGDLCV GVRRAKRAIS GGPESLWNPA 240 LGNLVVPYGG FGAFSREDEH KMVKNGRGNG NGSKSNESLM GRGKVRAESV IQAAVLAANG 300 LPFETVYYPR ANTPEFFVKA SLVKTVMQIR WCSGMRFKMA FETEDSSRIS WFMGTVCSVQ 360 DADPLCWPGS PWRLLQVTWD EPDLLQNVKR VSPWLVELAS HMSAIHLSPF SSPRKKLRLP 420 QHPDFPIDGQ FPMPIFSGNL LQPSSPFGFL PNNIPAGMQG ARHAHYGLPL SDLNLNKLHT 480 GLLRAGFPPL LDHTASLTKA SNIQTIQKPI LSEGVSCELT MSHSTQTSKR ADDVKIPQLV 540 LFGQRIVAEQ YISRSCSDNT GSPVLARNSC FEGKLDKMAK FSEGSVSTLP HRGLSKHSSC 600 EGLQWNKNNH RKSEQSLEIG HCKVFLESED VGRTLDLQLL ESYEELYRKL ADMFGLRNSE 660 KFSNLLYRDD NGITKHIGEE PFSNFSKTAR RLTIVTRFRQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-82 | 3 | 397 | 32 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G090300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT585479 | 0.0 | KT585479.1 Populus tomentosa auxin response factor 16 (ARF16) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011007683.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | B9IFN4 | 0.0 | B9IFN4_POPTR; Auxin response factor | ||||
STRING | POPTR_0016s09150.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 | Representative plant | OGRP526 | 15 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G090300.1 |
Entrez Gene | 7467624 |
Publications ? help Back to Top | |||
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