PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G087400.1 | ||||||||
Common Name | POPTR_0016s08890g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 90aa MW: 9780.57 Da PI: 10.3963 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 134.8 | 2e-42 | 24 | 89 | 5 | 70 |
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +e kGlnPGlivllv+ggll+ flvgn++ly+yaqk+lPP+kkkPvskkk+k+e+lkqGv++PGe Potri.016G087400.1 24 DAEPKGLNPGLIVLLVIGGLLMSFLVGNFVLYTYAQKTLPPKKKKPVSKKKMKKERLKQGVSAPGE 89 6799*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 3.0E-7 | 22 | 89 | No hit | No description |
Pfam | PF04689 | 2.4E-39 | 25 | 89 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MADDFEFSDQ SPPSFQNMGN VIKDAEPKGL NPGLIVLLVI GGLLMSFLVG NFVLYTYAQK 60 TLPPKKKKPV SKKKMKKERL KQGVSAPGE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.2872 | 7e-88 | bud| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G087400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144583 | 1e-149 | EF144583.1 Populus trichocarpa clone WS01111_F03 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323459.1 | 9e-58 | DNA-binding protein S1FA | ||||
Swissprot | Q7XLX6 | 2e-15 | S1FA2_ORYSJ; DNA-binding protein S1FA2 | ||||
TrEMBL | A9P8W5 | 2e-56 | A9P8W5_POPTR; S1Fa-like family protein | ||||
STRING | POPTR_0016s08890.1 | 4e-57 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5409 | 33 | 55 | Representative plant | OGRP5095 | 13 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09735.1 | 1e-07 | S1FA-like DNA-binding protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G087400.1 |
Entrez Gene | 7465307 |
Publications ? help Back to Top | |||
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