PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G084500.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 480aa    MW: 52222.9 Da    PI: 8.6107
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G084500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-17158207155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Potri.016G084500.2 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 207
                         78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.23E-16158217IPR016177DNA-binding domain
PfamPF008475.5E-9158207IPR001471AP2/ERF domain
CDDcd000181.09E-11159217No hitNo description
Gene3DG3DSA:3.30.730.104.2E-17159216IPR001471AP2/ERF domain
SMARTSM003805.3E-33159221IPR001471AP2/ERF domain
PROSITE profilePS5103217.794159215IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-6250294IPR016177DNA-binding domain
CDDcd000182.46E-13250295No hitNo description
SMARTSM003806.7E-13251299IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MMLDLNLTAG SGDSSTTAKN NNKMKILELS NSPMESSGSF NSSSVVNADG CGDEDSCSNG  60
DVFALNFSIL SNESSSKKTV YSNTNDHDDR GDRTIQLFPV ECGPKNVGGE SNSSSTVQMQ  120
PVDLGGSRNY GGPPEQGIGA RQQKPVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG  180
KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFNVSDYD EDIKQMSGFT KEEFVHTLRR  240
QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKAYDKAA IKCNGREAVT NFEPSKYEGE  300
ILSEPSSGDG NQNLDLKLGI APPDASDSLK VNSNMGGFYF HGGWDGVSTD RAPKFLNSVS  360
ATMKNQLPNG PGVTSVHPPM WDGINHRIFP IYEERAIEKR MEVDSFPNWT RQIQGPYGGG  420
ANPLPLFSTA ASSGFASSAI MAPSAAAGQL HYPSSTILHH RFSPPITNPS NISQFYCRS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G084500.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443792.10.0ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK031e-91RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2K1XCQ80.0A0A2K1XCQ8_POPTR; Uncharacterized protein
STRINGPOPTR_0016s08530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.15e-89related to AP2.7