PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G083600.2
Common NamePOPTR_0016s08440g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 383aa    MW: 42216.4 Da    PI: 10.2499
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G083600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.71e-32187243360
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Potri.016G083600.2 187 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 243
                         9***************************************.***************85 PP
2WRKY1054e-33301358259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg++WrKYGqK v+g+++prsYYrCts +C+v+k+ver+++dpk++++tYeg+Hnhe
  Potri.016G083600.2 301 GDGFRWRKYGQKIVRGNPYPRSYYRCTSLKCNVRKHVERASDDPKAFITTYEGKHNHE 358
                         5********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-29176244IPR003657WRKY domain
SMARTSM007741.8E-36185243IPR003657WRKY domain
SuperFamilySSF1182901.31E-25185244IPR003657WRKY domain
PfamPF031062.7E-25187241IPR003657WRKY domain
PROSITE profilePS5081123.617187244IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-34285360IPR003657WRKY domain
SuperFamilySSF1182903.01E-28294360IPR003657WRKY domain
PROSITE profilePS5081134.98295360IPR003657WRKY domain
SMARTSM007743.3E-38300359IPR003657WRKY domain
PfamPF031065.0E-26302358IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEIKESERVV IAKPVASRPS CSKFRSFSEL LAGAINTSPS TDCSEMAVAA IRPKTLRFRP  60
TVNRAPGALV SSQVELSGTT LSNSSNRVSS TDSKTTVIYK PQAKFVSKAT VSLLASMGNF  120
NTNSQQMLQS VEARPQCPKQ NKQNFSSQLT SNLHQNIPSH AVLLTSQNQE DPKALSHASN  180
GDRASYDGYN WRKYGQKQVK GSEYPRSYYK CTYPNCPVKK KVERSFDGQI AEIVYKGEHN  240
HSKPQPPKRN SSGTQGLGAV SDSNAQDRKA GIQSNKGGIS GEGVQEPRVV VQSSTDSEIL  300
GDGFRWRKYG QKIVRGNPYP RSYYRCTSLK CNVRKHVERA SDDPKAFITT YEGKHNHEMP  360
LKSTNIQPLN PDLQAPPSRD KL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-33187360877Probable WRKY transcription factor 4
2lex_A3e-33187360877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G083600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1796089e-87EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004128.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_011004129.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_011004130.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_011004131.10.0PREDICTED: WRKY transcription factor 44-like
TrEMBLA0A2K1XCR60.0A0A2K1XCR6_POPTR; Uncharacterized protein
STRINGPOPTR_0016s08440.20.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.25e-73WRKY DNA-binding protein 26