PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G074500.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 374aa    MW: 42349 Da    PI: 6.7707
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G074500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B386.72e-271952871199
                         HHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3  11 lksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         + ++rlv+pk++ae++    g +  ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD v+F+++++++ +l+++++
  Potri.016G074500.1 195 GLLNRLVIPKQHAEKYfplsGDSVDKGLLLSFEDESGKYWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDAVLFERHRTDGDRLFIGWR 285
                         55699**************966667889*************************************************98889999****** PP

                         -S CS
                  B3  98 rk 99 
                         r+
  Potri.016G074500.1 286 RR 287
                         97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.9E-15187288IPR003340B3 DNA binding domain
PfamPF023628.0E-25196287IPR003340B3 DNA binding domain
CDDcd100173.83E-19197277No hitNo description
SuperFamilySSF1019361.44E-23197290IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-34197298IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.196198288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MIDFFFLITQ NLKVGVLSYL YECLFPSPSP SPSPTSLSFS LIVISLLATS NSSHINPIII  60
TPHLSSVQYS LSLSLSTYQS TKILTLNSRM SINHFSTDLQ QTLSWWAQQR QSIMEPNPNT  120
SSSKPNKPPN SSWPPHLHHH DHHHSWLNHF SPQEPSSMFP PQNPNLSFNL NEEDDEEEYH  180
EQQQEEAQRE HEQEGLLNRL VIPKQHAEKY FPLSGDSVDK GLLLSFEDES GKYWRFRYSY  240
WNSSQSYVLT KGWSRYVKEK QLDAGDAVLF ERHRTDGDRL FIGWRRRGEM SSSSSANNSG  300
VMVQGSGGGA WRRGLYSSPS SSGPYHLSGS NMQHGHGANV SATTVPFQSD FLHAGIFYLY  360
ASHFNFVSSF IIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-401872872113B3 domain-containing transcription factor NGA1
5os9_B7e-401872872113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G074500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442987.10.0B3 domain-containing protein At2g36080
TrEMBLA0A3N7G2N70.0A0A3N7G2N7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s22460.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.23e-49B3 family protein