PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G074200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 446aa    MW: 47641.4 Da    PI: 6.3166
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G074200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP33.41.6e-1031951982
                 TCP 19 dRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssa 82
                          R+R++a c   ++ + deLG+ +  ++i WL +   p  + +++t+++++s+   +  +  s+
  Potri.016G074200.1 31 KVRIRMPAICSPAIYRIKDELGLGSCDEAIHWLVRHVRPDLIPAPETPTKTKSSKtGPIPKTGSV 95
                        56*********************************************777664433333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-53382IPR005333Transcription factor, TCP
SuperFamilySSF563171.96E-62130408IPR003010Carbon-nitrogen hydrolase
Gene3DG3DSA:3.60.110.101.5E-65131406IPR003010Carbon-nitrogen hydrolase
CDDcd075642.74E-107132404No hitNo description
PROSITE profilePS5026337.801132432IPR003010Carbon-nitrogen hydrolase
PfamPF007951.0E-55133402IPR003010Carbon-nitrogen hydrolase
PROSITE patternPS009200164179IPR000132Nitrilase/cyanide hydratase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0016810Molecular Functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEEEFAKNAE AKQVKKRGPR PLIVAQSQAK KVRIRMPAIC SPAIYRIKDE LGLGSCDEAI  60
HWLVRHVRPD LIPAPETPTK TKSSKTGPIP KTGSVDHDSV PKPACMASPD GDMPAYDFLP  120
TAGGVPAARS PVKATVVQAS TVFFDTPATL EKAERLIAGA ASYGSQLLVF PEAFVGGYPT  180
CVKLDATNSP ETDGDLQKYY ASAIDVPGPE VDRLAKFAGK YKVHLVMGVV ERAGCYLYST  240
MLFFNSLGKC LGQHRKLIQT ASESALWRSG EKSTLPTYET SIGKIGGLIC WDNRLPLLRT  300
ELYDKGVEIY CAPTADAGEI WRASMTHIAL EGSCFVLSAN QFCRRRDYPL PPGNINGDAS  360
LDDITCAGGS VIISPSGTIL AGPDYQGECL ISADLDLGHI ILAKTQYGGI ESGVDKNHVS  420
VAANGSEPSL FAAEMTTKAL EELSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3wuy_A5e-3513240016285Nitrilase
3wuy_B5e-3513240016285Nitrilase
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, cotyledons, leaves and flowers. {ECO:0000269|PubMed:10574458}.
Functional Description ? help Back to Top
Source Description
UniProtHighly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269|PubMed:10574458, ECO:0000269|PubMed:11060302}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G074200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269|PubMed:10574458}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2852802e-91GU285280.1 Populus balsamifera isolate KUU07 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852812e-91GU285281.1 Populus balsamifera isolate KUU07 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852822e-91GU285282.1 Populus balsamifera isolate MGR10 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852832e-91GU285283.1 Populus balsamifera isolate MGR10 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852842e-91GU285284.1 Populus balsamifera isolate NWL07 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852852e-91GU285285.1 Populus balsamifera isolate NWL07 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852862e-91GU285286.1 Populus balsamifera isolate POR11 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852872e-91GU285287.1 Populus balsamifera isolate POR11 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852882e-91GU285288.1 Populus balsamifera isolate RNA13 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852892e-91GU285289.1 Populus balsamifera isolate RNA13 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852902e-91GU285290.1 Populus balsamifera isolate STL13 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852912e-91GU285291.1 Populus balsamifera isolate STL13 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852922e-91GU285292.1 Populus balsamifera isolate STO11 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852932e-91GU285293.1 Populus balsamifera isolate STO11 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852942e-91GU285294.1 Populus balsamifera isolate WHR03 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852952e-91GU285295.1 Populus balsamifera isolate WHR03 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852962e-91GU285296.1 Populus balsamifera isolate LOV02 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852972e-91GU285297.1 Populus balsamifera isolate LOV02 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852982e-91GU285298.1 Populus balsamifera isolate GIL14 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852992e-91GU285299.1 Populus balsamifera isolate GIL14 haplotype B nitrilase 4 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322807.30.0bifunctional nitrilase/nitrile hydratase NIT4B
SwissprotQ429661e-127NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B
TrEMBLA0A2K1XC700.0A0A2K1XC70_POPTR; Uncharacterized protein
STRINGPOPTR_0016s07510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1789636
Representative plantOGRP183523
Publications ? help Back to Top
  1. Dohmoto M,Sano J,Tsunoda H,Yamaguchi K
    Structural analysis of the TNIT4 genes encoding nitrilase-like protein from tobacco.
    DNA Res., 1999. 6(5): p. 313-7
    [PMID:10574458]
  2. Piotrowski M,Schönfelder S,Weiler EW
    The Arabidopsis thaliana isogene NIT4 and its orthologs in tobacco encode beta-cyano-L-alanine hydratase/nitrilase.
    J. Biol. Chem., 2001. 276(4): p. 2616-21
    [PMID:11060302]