PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G068200.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 274aa    MW: 30386.5 Da    PI: 9.5471
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G068200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA95.46.5e-30106162158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         d p+YVNaKQy++I++RR++Rak+  e+k  ++srkpy+h SRh hA+rRpRg+gGrF
  Potri.016G068200.3 106 DGPIYVNAKQYHGIMRRRKSRAKAVLENKS-TNSRKPYMHYSRHLHAMRRPRGCGGRF 162
                         57***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-32104165IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.189105165IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.8E-22108130IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.9E-26108162IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.8E-22139162IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MHQPIRFQSI YEFFSRYFQY DYLLTNQVIS HSGDCKTSGY GQKNLQAAIS LQTALPEYRA  60
HFDLGFGQPV ICTKYPLVDQ CYGVFSTFGP QISGRIMLPM SMTADDGPIY VNAKQYHGIM  120
RRRKSRAKAV LENKSTNSRK PYMHYSRHLH AMRRPRGCGG RFLNTKELNE GKGTMEAKKA  180
GDFQPSQATG SQNSEVLESG GATLNSSMEA NGGGSIFSGS EVTSMYNRGE LDLLQINRLG  240
PTFHSFSGMM DRGHGIVMPS KWVAAADNCC NLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-16106169265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A3e-16106167264HAPB protein
4g92_A3e-16106167264HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124MRRRKS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G068200.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322774.20.0nuclear transcription factor Y subunit A-10
RefseqXP_002322775.20.0nuclear transcription factor Y subunit A-10
SwissprotQ9M9X48e-54NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLB9IIJ30.0B9IIJ3_POPTR; Uncharacterized protein
STRINGPOPTR_0016s06860.30.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.13e-56nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  2. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]