PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G056400.4
Common NamePOPTR_0016s05670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 488aa    MW: 53745.2 Da    PI: 8.8977
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G056400.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.3e-13132188155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  Potri.016G056400.4 132 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 188
                         57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-14132197IPR016177DNA-binding domain
PfamPF008477.3E-9132188IPR001471AP2/ERF domain
PROSITE profilePS5103218.518133196IPR001471AP2/ERF domain
SMARTSM003803.8E-19133202IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-12133197IPR001471AP2/ERF domain
PRINTSPR003675.3E-5134145IPR001471AP2/ERF domain
PRINTSPR003675.3E-5178198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MRFTLQQPQN NIVISKPIKD IPVISPSPLA TSGKNQQSKR CFLCNSQFGF FFLDQIMASS  60
SSHPVLKPEI GGVGCGGGSS GGGGGESSEA AVIANDQLLL YRGLKKPKKE RGCTAKERIS  120
KMPPCTAGKR SSIYRGVTRH RWTGRYEAHL WDKSTWNQNQ NKKGKQGAYD DEEAAARAYD  180
LAALKYWGPG TLINFPVTDY KRDLEEMQNV SREEYLASLR RKSSGFSRGL SKYRALSSRW  240
DSSCSRMPGS EYCSSVNYGA GDDHAAESEY GGSFCIERKI DLTGYIKWWN SHSTRQVESI  300
MKSSEDTKHG CPDDIGSELK TSEREVKCTQ PYQMPHLGLS VEGKGHTRST ISALSILSQS  360
AAYKSLQEKA SKKQETSTEN DENENKNSVN KMDRGKAVEK STSHDGCSER LGATLGITGG  420
LSLQRNVYPS TPFLSAPLLT NYNTIDPLVD PILWTSLVPA LPTGLSRNPE VTKTETISTY  480
SFFRPEE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G056400.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175870.0AC217587.1 Populus trichocarpa clone POP031-F05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443950.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-165AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A3N7G2H40.0A0A3N7G2H4_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05670.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-162AP2 family protein