PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G056400.3 | ||||||||
Common Name | POPTR_0016s05670g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | AP2 | ||||||||
Protein Properties | Length: 505aa MW: 55834.8 Da PI: 8.9977 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.4 | 3.5e-13 | 151 | 207 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g Potri.016G056400.3 151 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 207 57*******************6666777775555599******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.7E-9 | 151 | 207 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-14 | 151 | 216 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.518 | 152 | 215 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-11 | 152 | 216 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-19 | 152 | 221 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-5 | 153 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-5 | 197 | 217 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MLFQKPLSYH ITPHPLLTVM RFTLQQPQNN IVISKPIKDI PVISPSPLAT SGKNQQSKRC 60 FLCNSQFGFF FLDQIMASSS SHPVLKPEIG GVGCGGGSSG GGGGESSEAA VIANDQLLLY 120 RGLKKPKKER GCTAKERISK MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN 180 KKGKQGAYDD EEAAARAYDL AALKYWGPGT LINFPVTDYK RDLEEMQNVS REEYLASLRR 240 KSSGFSRGLS KYRALSSRWD SSCSRMPGSE YCSSVNYGDD HAAESEYGGS FCIERKIDLT 300 GYIKWWNSHS TRQVESIMKS SEDTKHGCPD DIGSELKTSE REVKCTQPYQ MPHLGLSVEG 360 KGHTRSTISA LSILSQSAAY KSLQEKASKK QETSTENDEN ENKNSVNKMD RGKAVEKSTS 420 HDGCSERLGA TLGITGGLSL QRNVYPSTPF LSAPLLTNYN TIDPLVDPIL WTSLVPALPT 480 GLSRNPEVTK TETISTYSFF RPEE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G056400.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217587 | 0.0 | AC217587.1 Populus trichocarpa clone POP031-F05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443951.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 | ||||
Swissprot | Q8GWK2 | 1e-161 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A2K1XB87 | 0.0 | A0A2K1XB87_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s05670.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-158 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G056400.3 |
Entrez Gene | 7484017 |