PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G056400.2
Common NamePOPTR_0016s05670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 430aa    MW: 47262.7 Da    PI: 8.5734
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G056400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.72.8e-1376132155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  Potri.016G056400.2  76 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 132
                         57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-976132IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1576141IPR016177DNA-binding domain
SMARTSM003803.8E-1977146IPR001471AP2/ERF domain
PROSITE profilePS5103218.51877140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-1277141IPR001471AP2/ERF domain
PRINTSPR003674.3E-57889IPR001471AP2/ERF domain
PRINTSPR003674.3E-5122142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MASSSSHPVL KPEIGGVGCG GGSSGGGGGE SSEAAVIAND QLLLYRGLKK PKKERGCTAK  60
ERISKMPPCT AGKRSSIYRG VTRHRWTGRY EAHLWDKSTW NQNQNKKGKQ GAYDDEEAAA  120
RAYDLAALKY WGPGTLINFP VTDYKRDLEE MQNVSREEYL ASLRRKSSGF SRGLSKYRAL  180
SSRWDSSCSR MPGSEYCSSV NYGDDHAAES EYGGSFCIER KIDLTGYIKW WNSHSTRQVE  240
SIMKSSEDTK HGCPDDIGSE LKTSEREVKC TQPYQMPHLG LSVEGKGHTR STISALSILS  300
QSAAYKSLQE KASKKQETST ENDENENKNS VNKMDRGKAV EKSTSHDGCS ERLGATLGIT  360
GGLSLQRNVY PSTPFLSAPL LTNYNTIDPL VDPILWTSLV PALPTGLSRN PEVTKTETIS  420
TYSFFRPEE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G056400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175870.0AC217587.1 Populus trichocarpa clone POP031-F05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443951.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK21e-162AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2K1XB870.0A0A2K1XB87_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05670.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-159AP2 family protein