PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G056400.1 | ||||||||
Common Name | POPTR_0016s05670g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | AP2 | ||||||||
Protein Properties | Length: 508aa MW: 56210.2 Da PI: 8.9901 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.8 | 4.9e-17 | 151 | 210 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g Potri.016G056400.1 151 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 210 57*******************766644468557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.95E-17 | 151 | 219 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.3E-13 | 151 | 210 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-25 | 152 | 224 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.126 | 152 | 218 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-15 | 152 | 219 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-5 | 153 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-5 | 200 | 220 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MLFQKPLSYH ITPHPLLTVM RFTLQQPQNN IVISKPIKDI PVISPSPLAT SGKNQQSKRC 60 FLCNSQFGFF FLDQIMASSS SHPVLKPEIG GVGCGGGSSG GGGGESSEAA VIANDQLLLY 120 RGLKKPKKER GCTAKERISK MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN 180 KKGKQVYLGA YDDEEAAARA YDLAALKYWG PGTLINFPVT DYKRDLEEMQ NVSREEYLAS 240 LRRKSSGFSR GLSKYRALSS RWDSSCSRMP GSEYCSSVNY GDDHAAESEY GGSFCIERKI 300 DLTGYIKWWN SHSTRQVESI MKSSEDTKHG CPDDIGSELK TSEREVKCTQ PYQMPHLGLS 360 VEGKGHTRST ISALSILSQS AAYKSLQEKA SKKQETSTEN DENENKNSVN KMDRGKAVEK 420 STSHDGCSER LGATLGITGG LSLQRNVYPS TPFLSAPLLT NYNTIDPLVD PILWTSLVPA 480 LPTGLSRNPE VTKTETISTY SFFRPEE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G056400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217587 | 0.0 | AC217587.1 Populus trichocarpa clone POP031-F05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443951.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 | ||||
Swissprot | Q8GWK2 | 1e-166 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A2K1XB87 | 0.0 | A0A2K1XB87_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s05670.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6007 | 29 | 36 | Representative plant | OGRP9107 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-162 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G056400.1 |
Entrez Gene | 7484017 |