PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G055500.1
Common NamePOPTR_0016s05580g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 646aa    MW: 70577.8 Da    PI: 7.7789
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G055500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.57.5e-381012262126
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgk.dk 90 
                         +pG+rF P+d+elvveyL kk+++++l+  + i+ev+iy+++P++L +k+k  +e+ wyfF++r+kky++g+r+ r +  g+Wk tg+ d+
  Potri.016G055500.1 101 APGIRFFPHDQELVVEYLMKKIRNEPLPK-NRIHEVNIYEYHPKTLAEKYKLySEDAWYFFTTRSKKYPNGNRPDRGVPGGFWKPTGSpDT 190
                         69************************999.77**************85544436779*******************99*********9889 PP

                 NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmhey 126
                         ++l+++++++  +++L fy+g+ + g++tdW mhey
  Potri.016G055500.1 191 KILDENSNTMVERRSLDFYEGKGKGGNRTDWKMHEY 226
                         9***9******************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-4298254IPR003441NAC domain
PROSITE profilePS5100543.164100254IPR003441NAC domain
PfamPF023655.8E-17102226IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MQQNNGQSSM SNYNSSKKMK AGASDRDSND NDMQFSTNIL SNASADMFPD QFSTPPNIAM  60
ITACSPTTLV NRLDQRQPQG SSSRVNVDDG NYIDPYFRGF APGIRFFPHD QELVVEYLMK  120
KIRNEPLPKN RIHEVNIYEY HPKTLAEKYK LYSEDAWYFF TTRSKKYPNG NRPDRGVPGG  180
FWKPTGSPDT KILDENSNTM VERRSLDFYE GKGKGGNRTD WKMHEYYPTT NNVSSSNTKG  240
MRLNDCILCR IYLKREKQKA EAKKTGKKSR NDGNTVSHGP ADSRNDASTS YNYNSQQPAN  300
HAAFTSDTME VYFNGIQPYD SNMNQCCYGD NSNQIAAMME PAMYTLPNSI EGTGRGSSQR  360
VAFAVPSSSM PLTMNVAGLN GLSSSMPLTM HGAGFMRGPN SSMPLTMHGA GFMRGPNSLM  420
PLTMHAAGLN EPNSTMHLPG LNGPNFSMPL TMHGAGLNGS SMPLTMLDAR LNGPSSSIPL  480
TMHGAGLNGP NSSMMHGARL NGPNSSMMHG AGLNGSKYSS MMHGARLNGP NSSMMHGAGL  540
NGPNSSTPLT MHGAGLNEPA NSSMPLTMHA AGLNGPISSM PPTTLPIDNM EGNDHLVEPN  600
NDIQFNNHQE LNDDLRYSLP DSAFRDDAMA RIHEMWVSSN SRREG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-3210226422174NAC domain-containing protein 19
3swm_B8e-3210226422174NAC domain-containing protein 19
3swm_C8e-3210226422174NAC domain-containing protein 19
3swm_D8e-3210226422174NAC domain-containing protein 19
3swp_A8e-3210226422174NAC domain-containing protein 19
3swp_B8e-3210226422174NAC domain-containing protein 19
3swp_C8e-3210226422174NAC domain-containing protein 19
3swp_D8e-3210226422174NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G055500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033356.10.0PREDICTED: uncharacterized protein LOC105131874
TrEMBLB9II770.0B9II77_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2307634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-37NAC domain containing protein 25