PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G052700.1
Common NamePOPTR_0016s05310g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 359aa    MW: 40936.6 Da    PI: 7.0245
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G052700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001281303123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk F  + + ++H +++
  Potri.016G052700.1 281 FMCRKCGKAFAVRGDWRTHEKNC 303
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.3E-6197216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.58197219IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64197224IPR007087Zinc finger, C2H2
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
SMARTSM00355310243276IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.68E-6263301No hitNo description
Gene3DG3DSA:3.30.160.609.5E-6268301IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549281301IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808281301IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MADPYSNFFT GWVKFNNNPL QHYPSPPQQL PYTHNFYTST TSPANHNQPY FHYYHNPPRS  60
PPLKEALPLL RLSPTRQGKE QDQQRQDDDE EEEEEIQELS CRAMDVDKIK YRAKDQESFF  120
SSCSANNKED EESVSVALHI GLPSPSAAEM ATVLSSSSEI TDKDGDGDDS VYPISRLNKG  180
QYWIPTPSQI LIGPTQFSCP VCCKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR  240
LPCYCCAPGC KNNIDHPRAK PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE  300
KNCGKLWYCI CGSDFKHKRS LKDHIKAFGS GHAAYGNDGF EEEDEPSSEV EQDNESMQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G052700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323306.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-145ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLB9II500.0B9II50_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-136C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]