PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.016G051100.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 349aa MW: 38734.2 Da PI: 6.0658

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.016G051100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7.3e-09	192	239	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+el+P + +k a +L + +++++ Lq Potri.016G051100.1 192 SHSLAERARREKINQRMKLLQELVPGC----NKISGTALVLDEIINHVQFLQ 239 8*************************9....788889999999999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-15	186	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.37E-8	186	243	No hit	No description
PROSITE profile	PS50888	14.678	188	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-15	188	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-6	192	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-8	194	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MDLLMGPVAR SGPELDETGL DSLQFGEDIR HLITAPSENA SSFTALLELP ANQAVELLHS 60 DSGQKQCPNL TFPSNTSLLE RAARFSVFNG GSNSTDSSSA PSDSSSKNLE KEAAVKREPL 120 ETESYLDSSQ PLVSDPKVDN PAPNARACSK RKEREKKVKG ASKKSKNEGS QQEEEKLPYV 180 HVRARRGQAT DSHSLAERAR REKINQRMKL LQELVPGCNK ISGTALVLDE IINHVQFLQR 240 QVEILSMRLA AVNPRIDFNL DSIFATESGS LIDSNFPSMV MPPTWPEAQV NRNRHQFQRQ 300 WQFDAPHQPV WGREEDSHNF ITPENSLLSY DSSANSASLH SNQMKMEL*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MDLLMGPVAR SGPELDETGL DSLQFGEDIR HLITAPSENA SSFTALLELP ANQAVELLHS  60
DSGQKQCPNL TFPSNTSLLE RAARFSVFNG GSNSTDSSSA PSDSSSKNLE KEAAVKREPL  120
ETESYLDSSQ PLVSDPKVDN PAPNARACSK RKEREKKVKG ASKKSKNEGS QQEEEKLPYV  180
HVRARRGQAT DSHSLAERAR REKINQRMKL LQELVPGCNK ISGTALVLDE IINHVQFLQR  240
QVEILSMRLA AVNPRIDFNL DSIFATESGS LIDSNFPSMV MPPTWPEAQV NRNRHQFQRQ  300
WQFDAPHQPV WGREEDSHNF ITPENSLLSY DSSANSASLH SNQMKMEL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.3475	0.0	bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.016G051100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002322692.3	0.0	transcription factor bHLH48
Swissprot	Q3EAI1	6e-97	BH060_ARATH; Transcription factor bHLH60
Swissprot	Q8VZ02	8e-98	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A2K1XAZ2	0.0	A0A2K1XAZ2_POPTR; Uncharacterized protein
STRING	POPTR_0006s05600.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4985	29	45
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-103	bHLH family protein

Link Out ? help Back to Top
Phytozome	Potri.016G051100.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]