PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G048500.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 383aa    MW: 41034.4 Da    PI: 8.8511
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G048500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.61.6e-4281156176
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                         +CqvegC++dls+ak+y++rhkvC++hsk+p v+v+gl qrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+
  Potri.016G048500.1  81 RCQVEGCKVDLSDAKTYYSRHKVCSMHSKSPRVIVAGLVQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRKP 156
                         6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.2E-3573143IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.33479156IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-4080159IPR004333Transcription factor, SBP-box
PfamPF031105.5E-3282155IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MNSRHLLMEM DSGSLTESAT SNATSPPAES VNGLKFGKKI YFEDHVGVGA PAKSGTGSSS  60
SGSGSGSSRK AQGGQHQQPP RCQVEGCKVD LSDAKTYYSR HKVCSMHSKS PRVIVAGLVQ  120
RFCQQCSRFH LLPEFDQGKR SCRRRLAGHN ERRRKPPSGS VLSARHGRFS PSLFDNSSRA  180
GGLLVDFSAY PRHTGRDGWP AARSSELTPG NDTAATGRSI SHMWQISSQN PPSNLCLQGS  240
TGGTGLFSSG IPPGECFTGV AVSDSSCALS LLSNQPWGST NRASSLAVND LFSAEEAPVV  300
QSTAHHGAAV NQYPIPWSFK SNEGSNSSHE MCPDLGLGQI SMPLNSQLAG QLEQSQQNRR  360
QYMDLEHSRA YDSSTQHIHW SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-30821551184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G048500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322678.30.0squamosa promoter-binding-like protein 9
TrEMBLA0A2K1XAV40.0A0A2K1XAV4_POPTR; Uncharacterized protein
STRINGPOPTR_0016s04890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-68squamosa promoter binding protein-like 9