PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.016G048000.3

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 228aa MW: 24973.5 Da PI: 5.8799

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.016G048000.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	26.4	1.6e-08	174	198	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r+rWt+ LHe+F+++v++LG + Potri.016G048000.3 174 KKRIRWTQGLHEKFIKCVNSLGCCK 198 78*******************8654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-6	172	201	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MGEVSQSQDV EPATSTNIIP SQFDQLAPAF CISECLFDLQ QDDDYEFPTF PSCSQVPGPN 60 DAKMSSNQSS RGNIFDESSW QTVLRPYLFS NQHHKYCEKT QKHLSSINLG GSTSLSLERV 120 QLLGDNATLI GRPLQPTSDR QNDPEQLESS TRHLGDGSST SSGSGSSGPI FSSKKRIRWT 180 QGLHEKFIKC VNSLGCCKSK TKGHTEDDGN ERIDHRSGQK SLAEISI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.016G048000.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443215.1	1e-164	uncharacterized protein LOC18109673 isoform X3
TrEMBL	A0A2K1XAU4	1e-166	A0A2K1XAU4_POPTR; Uncharacterized protein
STRING	POPTR_0453s00230.1	1e-125	(Populus trichocarpa)

Link Out ? help Back to Top
Phytozome	Potri.016G048000.3