PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G048000.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 233aa MW: 25543.2 Da PI: 6.1512 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 26.3 | 1.6e-08 | 179 | 203 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r+rWt+ LHe+F+++v++LG + Potri.016G048000.2 179 KKRIRWTQGLHEKFIKCVNSLGCCK 203 78*******************8654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-6 | 177 | 206 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGEVSQSQDV EPATSTNIIP SQFDQLAPAF CISECLFDLQ QDDDYEFPTF PSCSQVPGPN 60 DAKMSSNQSS RGNIFDESSW QTVLRPYLFS NQHHKYCEKT QKHLSSINLG GSTSLSLERV 120 QLLGDNATLI GRPLQPTSDR QNDPELLKSQ QLESSTRHLG DGSSTSSGSG SSGPIFSSKK 180 RIRWTQGLHE KFIKCVNSLG CCKSKTKGHT EDDGNERIDH RSGQKSLAEI SI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G048000.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443214.1 | 1e-167 | myb family transcription factor PHL5 isoform X2 | ||||
TrEMBL | A0A2K1XAS9 | 1e-170 | A0A2K1XAS9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0453s00230.1 | 1e-130 | (Populus trichocarpa) |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G048000.2 |