PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.016G047900.1 | ||||||||
Common Name | POPTR_0016s04830g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 381aa MW: 43015.8 Da PI: 7.658 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.5 | 5.6e-32 | 205 | 259 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH++Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Potri.016G047900.1 205 KTRIRWTQDLHKKFVECVNRLGGAEKATPKAILKLMDSDGLTIFHVKSHLQKYRS 259 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.37 | 202 | 262 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-17 | 203 | 259 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 203 | 260 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-23 | 205 | 259 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-8 | 209 | 258 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.7E-19 | 289 | 335 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 381 aa Download sequence Send to blast |
MASRLQPAAV EAGCQNQNIS LERSPDSIMS RFESPASAFY ATERYMRFPQ YDCQVGNYFC 60 SQYSNSYDSH VSSHQSSGAD YINSGEQADH NFGLKSTLES VVKPQFSCHK SFDKSDKGLS 120 SSSGNKLPSE HHNKFLDNPG VSLENHFLVP FQGNQNRQVD YNPYNSPFSE LGRFNSREEK 180 RSPRFSLGGF PISSGKDLST TLSSKTRIRW TQDLHKKFVE CVNRLGGAEK ATPKAILKLM 240 DSDGLTIFHV KSHLQKYRSA RYMPDSSEGK AEKRTSIDDV SQLDVKTGFQ IREALEVQLD 300 VQRRLHEQLE IQKILQLRIE EQGKQLKMMF DQQQKKTNSL LNNQNLNITS PDESTFSLED 360 IDVSIVEGSN NNTHFPSKIS * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-23 | 205 | 262 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-23 | 205 | 262 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-23 | 205 | 262 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-23 | 205 | 262 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-23 | 205 | 262 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-23 | 205 | 262 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-23 | 205 | 262 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-23 | 205 | 262 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.016G047900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322672.1 | 0.0 | myb family transcription factor PHL5 isoform X2 | ||||
TrEMBL | B9II05 | 0.0 | B9II05_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s04830.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3740 | 34 | 65 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06800.1 | 8e-75 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.016G047900.1 |
Entrez Gene | 7483986 |