PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G046600.2 | ||||||||
Common Name | POPTR_0016s04690g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 215aa MW: 22355.3 Da PI: 9.6259 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.6e-08 | 23 | 48 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k +lC+ + Ck+Gd+C+FaHg+ Potri.016G046600.2 23 KSRLCKKYNSAEGCKFGDKCHFAHGE 48 679*********************96 PP | |||||||
2 | zf-CCCH | 35 | 2.3e-11 | 181 | 205 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++fa+ G C +G rC+FaHg Potri.016G046600.2 181 YKTKLCDNFAK-GSCTFGQRCHFAHG 205 9**********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-13 | 19 | 51 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-8 | 20 | 52 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.826 | 21 | 49 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.01 | 23 | 48 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-6 | 23 | 48 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 3.1E-10 | 90 | 160 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.586 | 91 | 155 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 6.7E-15 | 92 | 160 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 3.51E-13 | 92 | 160 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 2.7E-10 | 93 | 157 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.42E-13 | 93 | 156 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-16 | 178 | 211 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.37E-9 | 179 | 210 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.1E-7 | 180 | 206 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.014 | 180 | 207 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-9 | 181 | 205 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MVNLGPTVAL PPVPNSSAPS AVKSRLCKKY NSAEGCKFGD KCHFAHGEWE LGKAFVPSHN 60 DPHAAGSVPG RLGGRVEPPP PGPATSFGVF ATTTRISVDA SLAGSIIGKA GVHSKQICRQ 120 TGIKLSIKDH ETNPNLKNIE LEGSLEQIAQ ASKMVEELVR VTSANAAAKS SGGHANPGSN 180 YKTKLCDNFA KGSCTFGQRC HFAHGAAELR KSSV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G046600.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323285.2 | 1e-156 | zinc finger CCCH domain-containing protein 31 | ||||
Swissprot | Q69XQ3 | 8e-73 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A2K1XAS0 | 1e-156 | A0A2K1XAS0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s04690.1 | 1e-155 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-62 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G046600.2 |
Entrez Gene | 7468933 |