PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G032600.3
Common NamePOPTR_0016s03240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 324aa    MW: 34582.5 Da    PI: 6.7006
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G032600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.68.7e-31112165155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Potri.016G032600.3 112 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMNVDGLTRENVASHLQKYRL 165
                         59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.76E-20109169IPR009057Homeodomain-like
PROSITE profilePS5129411.298109168IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-31111170IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-24113165IPR006447Myb domain, plants
PfamPF002492.2E-8115164IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MREDDSNWFS RWEEELPSLE ELMPLSQTLI TPDLALAFDI TNPTNTTNTN NHNSSLHQNQ  60
PLPPPPPPPA AVSPTPTNPL ASPQPNSGDF ATDSGELGSG AGGDEPARTL KRPRLVWTPQ  120
LHKRFVDAVA HLGIKNAVPK TIMQLMNVDG LTRENVASHL QKYRLYLKRM QGLSSGGGGP  180
GNGAVGGGGG LTGGSDAATD HLFASSPVPA HFLHPGRPNS DHFLPFVPVA ALQQHHHQQQ  240
MAAAAAAVGH PQLQGQYHRP MGHFGSPTNG QFEHPFLARQ TQQPVHRMGA PVHNAVPGYV  300
EDLESANGNE GRKVLTLFPT GDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-33112168157Transcription factor LUX
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269|PubMed:20331973}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G032600.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134140.0AC213414.1 Populus trichocarpa clone POP015-I11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006373694.10.0transcription factor MYBC1
SwissprotO222105e-66MYBC1_ARATH; Transcription factor MYBC1
TrEMBLB9P5280.0B9P528_POPTR; Uncharacterized protein
STRINGPOPTR_0016s03240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.12e-93G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]