PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G005900.1
Common NamePOPTR_0016s00760g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 364aa    MW: 39937.6 Da    PI: 5.0726
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G005900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.26.1e-20249335186
            trihelix   1 rWtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW++ ev+aLi +++  e+++r +g++  + W+++s+ m   g++r++k+Ckekwen+nk +k    ++ k+  ++s+  pyf +l+
  Potri.016G005900.1 249 RWPEAEVQALIMLQTAWEQQSRvTGSKGTNIWDAISAGMYNMGYNRTAKKCKEKWENINKHFKMSLGTAPKKPFQNSTVSPYFPELD 335
                         8*********************557777899*************************************999988888899***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.015242307IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.0E-5245308IPR009057Homeodomain-like
PfamPF138374.1E-17248336No hitNo description
CDDcd122039.58E-20249313No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDLLITGDRQ IQNPNDFPLQ ITPFPPTGNF TIPTSAAAPS AAEAGSSEAA SLPPQKLRPI  60
RRTGRVPSSS REDGEESLRG LVSGQPSEVA AGGGGGSGGG LFDDEFSLCS SDGNDDDLSV  120
GVGESVGRKR KRKSKIEKFL ESLVMKVMEK QEEMHKQLVE MIESRERERV IRDEAWKQQE  180
IERMKRDSEA RAQETSRNLA LISFIQNMTS GHVIEVPQPS MTFSHMVNDG GNADAPIQND  240
FMGDQSNQRW PEAEVQALIM LQTAWEQQSR VTGSKGTNIW DAISAGMYNM GYNRTAKKCK  300
EKWENINKHF KMSLGTAPKK PFQNSTVSPY FPELDTLYND DFVNLGNGSA NTDNQANCAL  360
GKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132RKRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G005900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101290.0AC210129.1 Populus trichocarpa clone POP009-F11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323120.10.0trihelix transcription factor GT-2
TrEMBLB9IH130.0B9IH13_POPTR; Uncharacterized protein
STRINGPOPTR_0016s00760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Representative plantOGRP1130157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.12e-46Trihelix family protein