PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.016G001200.1

Common Name

POPTR_0016s00320g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 315aa MW: 33886.4 Da PI: 6.5113

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.016G001200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105	4.2e-33	43	97	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPk+il++m+vkgLtl h+kSHLQkYRl Potri.016G001200.1 43 KPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSHLQKYRL 97 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.643	40	100	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-31	40	98	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.6E-17	43	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.0E-25	43	98	IPR006447	Myb domain, plants
Pfam	PF00249	6.1E-8	45	96	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-15	141	186	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MLESRGVGIG GMIMEEMHQN QSGIGIGLGM QGGAQVVLTS DPKPRLRWTA DLHQRFVDAV 60 SQLGGPNKAT PKAILRTMNV KGLTLFHLKS HLQKYRLGKQ SGKDMSDTFK DGLSGSYLLE 120 NPCTGNSSLN MTASDVNEGY EVKEALRAQM EVQSKLHLQV EAEKHLHIRL DAERRYLAML 180 ERACKMLADQ FIGAAVIDTD SQKGLGTRTT RIASLDPLGF YSLQTSEVAE VHGPEDVLPG 240 LHHQGADCST ESCLTSNESP GGLNLEGSPA GGKKGMLSLE SATSLIWGET RMGNAEVNAT 300 QVNSYGASLY GIWN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.3958	0.0	bud

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.016G001200.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006373552.1	0.0	protein PHR1-LIKE 3 isoform X1
Swissprot	Q94A57	5e-60	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	U5FM90	0.0	U5FM90_POPTR; G2-like family protein
STRING	POPTR_0016s00320.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-61	G2-like family protein

Link Out ? help Back to Top
Phytozome	Potri.016G001200.1
Entrez Gene	18106010

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]