PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G001100.1
Common NamePOPTR_0016s00310g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 315aa    MW: 34335.5 Da    PI: 5.648
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G001100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.95.4e-342882155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Potri.016G001100.1 28 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 82
                        79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4852585IPR017930Myb domain
SuperFamilySSF466897.88E-182782IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-322783IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-252883IPR006447Myb domain, plants
PfamPF002491.2E-93081IPR001005SANT/Myb domain
PfamPF143791.7E-23114160IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDLDCEAMTM DPINGGNSLN NNPNLASKQR LRWTHELHER FVDAVAQLGG PDRATPKGVL  60
RVMGVQGLTI YHVKSHLQKY RLAKYLPDSS SDGKKVDKKE TGDVLSNSDG SSGMQITEAL  120
KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY LKKIIEEQQR LSGVLEDVPG SGVSAPVSGD  180
NCPVSDNKTD PATPAPTSES PLQDKVAKEC APTKSLSIDE SFSSQHEPLT PDSRCNTGSP  240
AESPRGERSL KKQMVSMGVA FGKPEMVLTH QILESSLNSY PQPHSAFLTR EQFDPSSGLS  300
MGNEDQSEVL GSDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-242885259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-242885259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-242885158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-242885158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-242885158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-242885158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-242885259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-242885259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-242885259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-242885259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-242885259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-242885259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G001100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2248470.0CU224847.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006373551.10.0myb family transcription factor PHL7 isoform X1
SwissprotQ9SJW01e-133PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLB9N3W80.0B9N3W8_POPTR; Uncharacterized protein
STRINGPOPTR_0016s00310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86103343
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-110G2-like family protein