PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G143400.1 | ||||||||
Common Name | POPTR_0015s13190g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 208aa MW: 23333.7 Da PI: 4.5074 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.3 | 6.2e-12 | 2 | 29 | 19 | 48 |
TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48 lG++ W+ Ia++++ gRt++++k++w++yl Potri.015G143400.1 2 LGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 29 8999.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.862 | 1 | 33 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.6E-10 | 1 | 29 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.79E-10 | 2 | 37 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-15 | 2 | 30 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.15E-8 | 4 | 29 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MLGNKWSQIA QHLPGRTDNE IKNHWHSYLK KNLLKDEGME SLKRTKSDSS NSDIMELSPS 60 PKRLKMQASS FESSMSAEKS SADINRSVPQ MFESPNEPKG SSLLPKVMFA EWLSLESFAS 120 LGEPMDSKTT LDHNTIFQDN FLHDYLLDER AFGGEYHNSL SDGSSGDIFS SEFRFESQSP 180 GNEFDFSSGE DLCSDFNLSN ISDVMYI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 44 | ESLKRT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G143400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002321912.3 | 1e-148 | LOW QUALITY PROTEIN: transcription factor LAF1 | ||||
TrEMBL | A0A2K1XMX4 | 1e-148 | A0A2K1XMX4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s13190.1 | 1e-147 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3830 | 31 | 61 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 2e-14 | myb domain protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G143400.1 |
Entrez Gene | 7454505 |